Variant report

Variant	rs138921181
Chromosome Location	chr1:76620530-76620531
allele	-/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:76619528..76620590-chr1:77591988..77592713,3	MCF-7	breast:
2	chr1:76619799..76620863-chr1:77591812..77592540,5	K562	blood:
3	chr1:76620098..76620620-chr1:76796654..76797328,2	MCF-7	breast:
4	chr1:76619950..76620589-chr1:78579803..78580325,2	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1488	chr1:76587622-76632635	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv870621	chr1:76620313-76997071	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:76616400-76623600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr1:76619800-76620600	Enhancers	H1 Cell Line	embryonic stem cell
3	chr1:76619800-76620600	Flanking Active TSS	Brain Cingulate Gyrus	brain
4	chr1:76619800-76620600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:76619800-76620600	Enhancers	Fetal Heart	heart
6	chr1:76619800-76620600	Active TSS	Monocytes-CD14+_RO01746	blood
7	chr1:76619800-76621000	Enhancers	Sigmoid Colon	Sigmoid Colon
8	chr1:76619800-76646400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:76620000-76620600	Flanking Active TSS	Primary B cells from peripheral blood	blood
10	chr1:76620000-76620600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr1:76620000-76620600	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:76620000-76620600	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr1:76620000-76620600	Active TSS	Primary T helper naive cells fromperipheralblood	blood
14	chr1:76620000-76620600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
15	chr1:76620000-76620600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr1:76620000-76620600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:76620000-76620600	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
18	chr1:76620000-76620600	Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr1:76620000-76620600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr1:76620000-76620600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
21	chr1:76620000-76620600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:76620000-76620600	Flanking Active TSS	Liver	Liver
23	chr1:76620000-76620600	Flanking Active TSS	Brain Germinal Matrix	brain
24	chr1:76620000-76620600	Active TSS	Fetal Brain Female	brain
25	chr1:76620000-76620600	Flanking Active TSS	Fetal Intestine Large	intestine
26	chr1:76620000-76620600	Flanking Active TSS	Fetal Intestine Small	intestine
27	chr1:76620000-76620600	Flanking Active TSS	Fetal Kidney	kidney
28	chr1:76620000-76620600	Active TSS	Fetal Muscle Trunk	muscle
29	chr1:76620000-76620600	Flanking Active TSS	Fetal Stomach	stomach
30	chr1:76620000-76620600	Active TSS	Gastric	stomach
31	chr1:76620000-76620600	Active TSS	Left Ventricle	heart
32	chr1:76620000-76620600	Active TSS	Pancreas	Pancrea
33	chr1:76620000-76620600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr1:76620000-76620600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
35	chr1:76620000-76620600	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr1:76620000-76620600	Active TSS	A549	lung
37	chr1:76620000-76620600	Flanking Active TSS	GM12878-XiMat	blood
38	chr1:76620000-76620600	Flanking Active TSS	HepG2	liver
39	chr1:76620000-76620600	Flanking Active TSS	HMEC	breast
40	chr1:76620000-76620600	Flanking Active TSS	K562	blood
41	chr1:76620000-76620600	Flanking Active TSS	NH-A	brain
42	chr1:76620000-76620600	Active TSS	NHDF-Ad	bronchial
43	chr1:76620000-76620600	Active TSS	NHEK	skin
44	chr1:76620000-76620600	Flanking Active TSS	Osteobl	bone
45	chr1:76620000-76620800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
46	chr1:76620000-76620800	Active TSS	Primary B cells from cord blood	blood
47	chr1:76620000-76620800	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr1:76620000-76620800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr1:76620000-76620800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
50	chr1:76620000-76620800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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