Variant report

Variant	rs138958669
Chromosome Location	chr6:36663816-36663817
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:36647044..36648855-chr6:36663270..36664993,2	MCF-7	breast:
2	chr6:36572659..36575634-chr6:36662126..36664637,2	K562	blood:
3	chr6:36662298..36665035-chr6:36665168..36667578,2	MCF-7	breast:
4	chr6:36650057..36652668-chr6:36663338..36666266,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031191	chr6:36588974-36718015	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv538201	chr6:36588974-36718015	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv885808	chr6:36659932-36684518	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv3343209	chr6:36663774-36668072	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:36655000-36672000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:36655200-36669400	Weak transcription	Gastric	stomach
3	chr6:36656200-36665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:36659800-36665800	Weak transcription	Fetal Intestine Small	intestine
5	chr6:36660600-36666400	Enhancers	Primary B cells from cord blood	blood
6	chr6:36660800-36665200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr6:36660800-36665200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr6:36660800-36665200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:36660800-36666800	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:36661000-36665200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr6:36661000-36667000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:36661200-36664000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:36661200-36664000	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr6:36661200-36664600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:36661200-36666000	Weak transcription	Stomach Mucosa	stomach
16	chr6:36661200-36668600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:36661400-36664600	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr6:36661400-36665200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr6:36661400-36665200	Weak transcription	Esophagus	oesophagus
20	chr6:36661400-36665200	Weak transcription	Spleen	Spleen
21	chr6:36661400-36696400	Weak transcription	Right Atrium	heart
22	chr6:36663200-36666400	Weak transcription	Fetal Heart	heart
23	chr6:36663600-36664200	Weak transcription	Primary B cells from peripheral blood	blood

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