Variant report

Variant	rs138972063
Chromosome Location	chr13:52951246-52951247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934070	chr13:52362588-53174923	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
2	nsv1040931	chr13:52564792-53350914	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
3	nsv541773	chr13:52564792-53350914	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv428288	chr13:52728370-53068132	Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
5	nsv900084	chr13:52835231-53119704	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv983589	chr13:52950916-52951676	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:52934000-52951800	Weak transcription	Fetal Intestine Small	intestine
2	chr13:52946000-52951800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:52946000-52951800	Weak transcription	Adipose Nuclei	Adipose
4	chr13:52946000-52951800	Weak transcription	Fetal Muscle Trunk	muscle
5	chr13:52946000-52951800	Weak transcription	Left Ventricle	heart
6	chr13:52946000-52951800	Weak transcription	Lung	lung
7	chr13:52946000-52951800	Weak transcription	Pancreas	Pancrea
8	chr13:52946000-52951800	Weak transcription	Right Ventricle	heart
9	chr13:52946000-52952000	Weak transcription	Aorta	Aorta
10	chr13:52946000-52952000	Weak transcription	Ovary	ovary
11	chr13:52946000-52952800	Weak transcription	Gastric	stomach
12	chr13:52946000-52969600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr13:52946200-52951800	Weak transcription	Esophagus	oesophagus
14	chr13:52946200-52951800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr13:52946200-52952000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr13:52946200-52952600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr13:52946200-52979200	Weak transcription	A549	lung
18	chr13:52946800-52951800	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr13:52946800-52951800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr13:52946800-52951800	Weak transcription	Fetal Muscle Leg	muscle
21	chr13:52947400-52951800	Weak transcription	NHLF	lung
22	chr13:52947600-52951800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr13:52947800-52968000	Weak transcription	NHDF-Ad	bronchial
24	chr13:52948000-52951800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr13:52948000-52952000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr13:52948000-52952000	Weak transcription	NHEK	skin
27	chr13:52949000-52955800	Weak transcription	Brain Angular Gyrus	brain
28	chr13:52949200-52951800	Weak transcription	Brain Germinal Matrix	brain
29	chr13:52949400-52951800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr13:52949400-52951800	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr13:52949400-52952000	Weak transcription	HMEC	breast
32	chr13:52949400-52952000	Weak transcription	HUVEC	blood vessel
33	chr13:52949600-52951400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr13:52949600-52951600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr13:52949600-52951800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr13:52949600-52952800	Weak transcription	Liver	Liver
37	chr13:52949800-52951800	Weak transcription	Spleen	Spleen
38	chr13:52949800-52979000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr13:52950000-52951800	Weak transcription	Fetal Stomach	stomach
40	chr13:52950200-52951800	Weak transcription	Stomach Smooth Muscle	stomach
41	chr13:52950200-52954200	Strong transcription	HSMM	muscle
42	chr13:52950400-52952000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr13:52950400-52952000	Weak transcription	Fetal Intestine Large	intestine
44	chr13:52950400-52952600	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr13:52950600-52952200	Weak transcription	Fetal Brain Female	brain
46	chr13:52950600-52952600	Strong transcription	Osteobl	bone
47	chr13:52950600-52953600	Strong transcription	HSMMtube	muscle
48	chr13:52950800-52951400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr13:52951000-52952600	Weak transcription	Primary T cells from cord blood	blood
50	chr13:52951000-52953400	Weak transcription	Thymus	Thymus

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