Variant report

Variant	rs138972090
Chromosome Location	chr18:45662621-45662622
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45610278..45611790-chr18:45660940..45662780,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3337566	chr18:45661104-45665102	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45660800-45665000	Active TSS	Rectal Smooth Muscle	rectum
2	chr18:45661400-45663800	Active TSS	Esophagus	oesophagus
3	chr18:45661800-45662800	Bivalent Enhancer	Fetal Brain Male	brain
4	chr18:45661800-45664000	Active TSS	Colonic Mucosa	Colon
5	chr18:45662000-45663000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
6	chr18:45662000-45663200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:45662000-45663200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
8	chr18:45662000-45663200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
9	chr18:45662000-45663200	Flanking Active TSS	Placenta	Placenta
10	chr18:45662000-45663400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
11	chr18:45662000-45663400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:45662000-45663400	Active TSS	Duodenum Mucosa	Duodenum
13	chr18:45662000-45663400	Bivalent/Poised TSS	Small Intestine	intestine
14	chr18:45662000-45663600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
15	chr18:45662000-45663600	Active TSS	Right Atrium	heart
16	chr18:45662000-45663800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr18:45662000-45663800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
18	chr18:45662000-45663800	Active TSS	Brain Anterior Caudate	brain
19	chr18:45662000-45663800	Active TSS	Gastric	stomach
20	chr18:45662000-45664000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr18:45662000-45664000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
22	chr18:45662000-45664000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr18:45662000-45664000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr18:45662000-45664000	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr18:45662000-45664000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
26	chr18:45662000-45664000	Active TSS	Fetal Kidney	kidney
27	chr18:45662000-45664000	Active TSS	Rectal Mucosa Donor 31	rectum
28	chr18:45662000-45664200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
29	chr18:45662200-45662800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
30	chr18:45662200-45662800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
31	chr18:45662200-45662800	Bivalent Enhancer	Thymus	Thymus
32	chr18:45662200-45663000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr18:45662200-45663000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
34	chr18:45662200-45663000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
35	chr18:45662200-45663000	Active TSS	Skeletal Muscle Female	skeletal muscle
36	chr18:45662200-45663200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr18:45662200-45663200	Flanking Active TSS	Liver	Liver
38	chr18:45662200-45663200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
39	chr18:45662200-45663400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
40	chr18:45662200-45663600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr18:45662200-45663600	Flanking Bivalent TSS/Enh	Cortex derived primary cultured neurospheres	brain
42	chr18:45662200-45663600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr18:45662200-45663600	Active TSS	Aorta	Aorta
44	chr18:45662200-45663600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
45	chr18:45662200-45663600	Active TSS	Left Ventricle	heart
46	chr18:45662200-45663800	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
47	chr18:45662200-45663800	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr18:45662200-45663800	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr18:45662200-45663800	Bivalent/Poised TSS	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr18:45662200-45663800	Bivalent/Poised TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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