Variant report

Variant	rs1389836
Chromosome Location	chr5:35805553-35805554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11948206	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[EUR][1000 genomes]
rs13164644	0.86[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1389837	0.81[EUR][1000 genomes]
rs36093359	0.81[EUR][1000 genomes]
rs6882117	0.88[CEU][hapmap];0.92[GIH][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1389836	WDR70	cis	cerebellum	SCAN
rs1389836	NIPBL	cis	parietal	SCAN
rs1389836	IL7R	cis	parietal	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35801800-35807800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr5:35802200-35807800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
3	chr5:35802200-35808400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr5:35802400-35805800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr5:35802400-35807800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr5:35802600-35805600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr5:35802800-35805600	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr5:35803000-35805800	Enhancers	Brain Germinal Matrix	brain
9	chr5:35803400-35809400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr5:35803400-35809400	Weak transcription	Fetal Kidney	kidney
11	chr5:35803600-35805600	Enhancers	Primary T cells from cord blood	blood
12	chr5:35803800-35805800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35803800-35810600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr5:35803800-35813800	Weak transcription	Left Ventricle	heart
15	chr5:35804400-35809800	Weak transcription	Spleen	Spleen
16	chr5:35804600-35806400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr5:35804600-35809800	Weak transcription	Thymus	Thymus
18	chr5:35804800-35807400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr5:35804800-35807400	Weak transcription	Fetal Thymus	thymus
20	chr5:35804800-35807800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr5:35804800-35809800	Weak transcription	Dnd41	blood
22	chr5:35805000-35807200	Enhancers	Primary T helper cells PMA-I stimulated	--
23	chr5:35805200-35806400	Weak transcription	Primary T helper cells fromperipheralblood	blood

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