Variant report

Variant	rs138993769
Chromosome Location	chr1:172690162-172690163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172575736..172579106-chr1:172685787..172690333,5	MCF-7	breast:
2	chr1:172689246..172691904-chr1:172691926..172693561,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv946505	chr1:172689672-172693064	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172684000-172692400	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr1:172685000-172690400	Enhancers	Placenta	Placenta
3	chr1:172686000-172693600	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr1:172686200-172693800	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr1:172686200-172693800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr1:172686200-172693800	Weak transcription	Fetal Thymus	thymus
7	chr1:172687800-172692400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:172688800-172693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr1:172689000-172690200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr1:172689200-172692200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr1:172689200-172693200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:172689200-172693600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr1:172689200-172693600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
14	chr1:172689200-172693600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr1:172689200-172693600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr1:172689200-172693800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr1:172689200-172694000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
18	chr1:172689200-172696800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr1:172689200-172700400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr1:172689400-172690200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:172689400-172690400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:172689400-172693000	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr1:172689600-172692400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:172689800-172691200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr1:172689800-172692400	Weak transcription	NHEK	skin
26	chr1:172690000-172692200	Weak transcription	HMEC	breast

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