Variant report

Variant	rs139017436
Chromosome Location	chr1:10544287-10544288
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:10543950..10546722-chr1:10553163..10555710,2	K562	blood:
2	chr1:10536910..10540005-chr1:10543843..10547119,3	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757722	chr1:10238070-10582554	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv2758920	chr1:10238070-10582554	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv817370	chr1:10305470-10697150	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv1008021	chr1:10363794-10802633	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	esv2764192	chr1:10383734-10594186	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv1003498	chr1:10445928-10607351	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv998731	chr1:10464176-10607351	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	esv3358572	chr1:10543478-10546167	Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3359573	chr1:10543478-10546167	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2421360	chr1:10543836-10545046	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10535800-10555000	Weak transcription	Aorta	Aorta
2	chr1:10536000-10544800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:10536000-10548200	Weak transcription	Ovary	ovary
4	chr1:10536000-10549800	Weak transcription	Gastric	stomach
5	chr1:10536000-10549800	Weak transcription	Left Ventricle	heart
6	chr1:10536000-10550200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:10536000-10555000	Weak transcription	Esophagus	oesophagus
8	chr1:10536000-10555000	Weak transcription	HSMMtube	muscle
9	chr1:10536000-10555600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr1:10536200-10544400	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr1:10536200-10544800	Weak transcription	Osteobl	bone
12	chr1:10536200-10555000	Weak transcription	NH-A	brain
13	chr1:10536400-10549400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:10536400-10549400	Weak transcription	A549	lung
15	chr1:10536400-10549600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr1:10536400-10549800	Weak transcription	Primary B cells from cord blood	blood
17	chr1:10536400-10550000	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr1:10536400-10550000	Weak transcription	Brain Germinal Matrix	brain
19	chr1:10536400-10553000	Weak transcription	Psoas Muscle	Psoas
20	chr1:10536400-10554000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr1:10536400-10554600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr1:10536400-10554800	Weak transcription	Primary hematopoietic stem cells	blood
23	chr1:10536400-10554800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr1:10536400-10554800	Weak transcription	Fetal Brain Male	brain
25	chr1:10536400-10554800	Weak transcription	NHDF-Ad	bronchial
26	chr1:10536400-10555000	Weak transcription	Fetal Kidney	kidney
27	chr1:10536400-10555000	Weak transcription	HSMM	muscle
28	chr1:10536600-10544600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr1:10536600-10548200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr1:10536600-10549400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr1:10536600-10549400	Weak transcription	Primary B cells from peripheral blood	blood
32	chr1:10536600-10549400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr1:10536600-10549400	Weak transcription	Fetal Lung	lung
34	chr1:10536600-10549400	Weak transcription	GM12878-XiMat	blood
35	chr1:10536600-10549400	Weak transcription	Hela-S3	cervix
36	chr1:10536600-10549600	Weak transcription	Brain Hippocampus Middle	brain
37	chr1:10536600-10549800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr1:10536600-10550000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr1:10536600-10550000	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr1:10536600-10550200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr1:10536600-10550200	Weak transcription	Brain Anterior Caudate	brain
42	chr1:10536600-10554800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr1:10536600-10555000	Weak transcription	Brain Substantia Nigra	brain
44	chr1:10536800-10544400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr1:10536800-10549400	Weak transcription	Fetal Muscle Trunk	muscle
46	chr1:10536800-10549600	Weak transcription	Placenta	Placenta
47	chr1:10536800-10549800	Weak transcription	Fetal Brain Female	brain
48	chr1:10536800-10549800	Weak transcription	Right Ventricle	heart
49	chr1:10536800-10550000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr1:10536800-10554600	Weak transcription	Brain Inferior Temporal Lobe	brain

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