Variant report
| Variant | rs1390258 |
|---|---|
| Chromosome Location | chr4:21393737-21393738 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12499967 | 0.96[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1390262 | 1.00[CEU][hapmap] |
| rs1390264 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1390266 | 1.00[CEU][hapmap] |
| rs1495519 | 0.84[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs1495520 | 1.00[CEU][hapmap];0.87[EUR][1000 genomes] |
| rs1826738 | 1.00[CEU][hapmap] |
| rs1845694 | 1.00[CEU][hapmap] |
| rs1908552 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1948519 | 1.00[CEU][hapmap] |
| rs2322941 | 1.00[CEU][hapmap] |
| rs2322958 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs2322959 | 1.00[CEU][hapmap];0.84[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4618301 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap] |
| rs4696976 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs6854379 | 0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs7655472 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7657161 | 0.83[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7660556 | 1.00[CEU][hapmap] |
| rs7675173 | 1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.92[EUR][1000 genomes] |
| rs9996172 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013365 | chr4:20834054-21609078 | Bivalent/Poised TSS Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 4 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014062 | chr4:21270358-21479027 | Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 2 gene(s) | inside rSNPs | diseases |
| 3 | nsv1005453 | chr4:21295066-21454143 | Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
