Variant report

Variant	rs139030962
Chromosome Location	chr3:78779636-78779637
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:78766178..78768497-chr3:78778226..78779744,2	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010804	chr3:78739648-79087470	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv533681	chr3:78750924-79017336	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3404191	chr3:78777462-78781660	Weak transcription Flanking Active TSS Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv3499836	chr3:78778712-78780710	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3462078	chr3:78779284-78779822	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv822148	chr3:78779306-78779793	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3375085	chr3:78779309-78779811	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3499843	chr3:78779319-78779830	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3499833	chr3:78779335-78779764	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3499839	chr3:78779336-78779751	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	esv3462077	chr3:78779341-78779788	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3462079	chr3:78779344-78779784	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3462080	chr3:78779357-78779740	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3499837	chr3:78779360-78779768	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv3499835	chr3:78779364-78779769	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	esv3356831	chr3:78779380-78779738	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
17	esv3499838	chr3:78779405-78779720	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3462076	chr3:78779405-78779723	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	esv3499834	chr3:78779415-78779726	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv1007360	chr3:78779418-78779717	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
21	esv3462081	chr3:78779419-78779724	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv3499844	chr3:78779419-78779724	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
23	nsv236494	chr3:78779424-78779723	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:78766600-78783000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:78772000-78792200	Weak transcription	HepG2	liver
3	chr3:78774400-78783200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:78777400-78780000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr3:78777400-78780400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:78777600-78780000	Enhancers	Fetal Brain Male	brain
7	chr3:78777800-78780600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:78778200-78782800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr3:78778600-78781600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr3:78778600-78783200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:78778800-78779800	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr3:78778800-78779800	Weak transcription	NHDF-Ad	bronchial
13	chr3:78778800-78780600	Weak transcription	Brain Anterior Caudate	brain
14	chr3:78778800-78783000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:78778800-78783400	Weak transcription	Fetal Muscle Leg	muscle
16	chr3:78778800-78785600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr3:78778800-78787200	Weak transcription	HSMM	muscle
18	chr3:78779000-78782800	Weak transcription	Fetal Lung	lung
19	chr3:78779000-78782800	Weak transcription	Osteobl	bone
20	chr3:78779200-78779800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:78779200-78781600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr3:78779400-78779800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:78779400-78781600	Weak transcription	Brain Germinal Matrix	brain
24	chr3:78779400-78782200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr3:78779600-78783200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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