Variant report

Variant	rs139060205
Chromosome Location	chr18:24993930-24993931
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv833601	chr18:24908240-25080975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24991800-24994200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr18:24992000-24994600	Enhancers	HSMM	muscle
3	chr18:24992800-24994000	Weak transcription	Fetal Muscle Leg	muscle
4	chr18:24993000-24994600	Enhancers	Colon Smooth Muscle	Colon
5	chr18:24993400-24994000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr18:24993400-24994400	Enhancers	NH-A	brain
7	chr18:24993400-24994600	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr18:24993400-24994600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr18:24993400-24995000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:24993400-24995000	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr18:24993600-24994000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr18:24993600-24994200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr18:24993600-24994400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr18:24993600-24994400	Enhancers	Rectal Smooth Muscle	rectum
15	chr18:24993600-24994600	Enhancers	HSMMtube	muscle
16	chr18:24993600-24995800	Enhancers	Fetal Kidney	kidney
17	chr18:24993800-24994000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr18:24993800-24994000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr18:24993800-24994000	Enhancers	Brain Substantia Nigra	brain
20	chr18:24993800-24994000	Active TSS	Psoas Muscle	Psoas
21	chr18:24993800-24994200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr18:24993800-24994200	Enhancers	Fetal Stomach	stomach
23	chr18:24993800-24994400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr18:24993800-24994400	Enhancers	Brain Hippocampus Middle	brain
25	chr18:24993800-24994600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr18:24993800-24994600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr18:24993800-24994600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr18:24993800-24994800	Enhancers	Adipose Nuclei	Adipose
29	chr18:24993800-24995000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr18:24993800-24995000	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr18:24993800-24995000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr18:24993800-24995000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr18:24993800-24996000	Enhancers	Fetal Intestine Small	intestine

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