Variant report

Variant	rs139074654
Chromosome Location	chr10:4734899-4734900
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4728200-4735600	Weak transcription	Psoas Muscle	Psoas
2	chr10:4728200-4738000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:4733200-4735000	Enhancers	NHEK	skin
4	chr10:4733400-4735000	Enhancers	HMEC	breast
5	chr10:4733600-4735000	Enhancers	Osteobl	bone
6	chr10:4733800-4735000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4734200-4745800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:4734400-4742800	Weak transcription	NHLF	lung
9	chr10:4734400-4743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr10:4734600-4742800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:4734800-4736400	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr10:4734800-4740200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:4734800-4740200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr10:4734800-4745600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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