Variant report

Variant	rs139082119
Chromosome Location	chr3:112929087-112929088
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr3:112929039-112929317	SK-N-SH	brain:	n/a	chr3:112929193-112929202

Variant related genes	Relation type
BOC	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv829677	chr3:112857075-113038987	Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv1003511	chr3:112858775-112989045	Weak transcription Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1013506	chr3:112890608-113680951	Weak transcription Bivalent/Poised TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
5	nsv877346	chr3:112893640-112938683	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv877347	chr3:112895679-112934752	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv877348	chr3:112914756-113012509	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv3394751	chr3:112928562-112932960	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv3327808	chr3:112929062-112929100	Weak transcription Enhancers Flanking Active TSS	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112919400-112929200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:112922600-112929200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr3:112923600-112929200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:112926400-112929200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr3:112927200-112929200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:112927200-112929200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:112927200-112929200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr3:112928200-112929200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr3:112928200-112929200	Enhancers	Colon Smooth Muscle	Colon
10	chr3:112928200-112929200	Enhancers	Fetal Muscle Leg	muscle
11	chr3:112928400-112929200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:112928400-112929200	Enhancers	Fetal Stomach	stomach
13	chr3:112928400-112929200	Enhancers	Rectal Smooth Muscle	rectum
14	chr3:112928400-112929400	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr3:112928800-112929200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr3:112928800-112929200	Enhancers	Fetal Muscle Trunk	muscle
17	chr3:112928800-112929400	Enhancers	Fetal Lung	lung
18	chr3:112929000-112929200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr3:112929000-112929200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr3:112929000-112929200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:112929000-112929200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr3:112929000-112929200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr3:112929000-112929200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr3:112929000-112929200	Enhancers	Fetal Brain Female	brain
25	chr3:112929000-112929400	Enhancers	Fetal Brain Male	brain
26	chr3:112929000-112929600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr3:112929000-112929600	Flanking Active TSS	Stomach Smooth Muscle	stomach
28	chr3:112929000-112929800	Enhancers	Pancreas	Pancrea
29	chr3:112929000-112930000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain

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