Variant report

Variant	rs1390914
Chromosome Location	chr4:44916211-44916212
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10026401	0.89[EUR][1000 genomes]
rs10033288	0.87[EUR][1000 genomes]
rs11947433	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12645710	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13124323	0.93[ASN][1000 genomes]
rs13138261	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1390912	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1390913	0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16857902	0.88[ASN][1000 genomes]
rs17608448	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1845947	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34071858	0.86[EUR][1000 genomes]
rs34408560	0.83[EUR][1000 genomes]
rs34695181	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35392083	0.86[EUR][1000 genomes]
rs59593329	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6447393	0.88[ASN][1000 genomes]
rs6818427	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6841884	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6851930	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7436238	0.86[EUR][1000 genomes]
rs7663147	0.80[ASN][1000 genomes]
rs7667144	0.87[EUR][1000 genomes]
rs7675012	0.91[ASN][1000 genomes]
rs7679812	0.93[ASN][1000 genomes]
rs7684184	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7699370	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531944	chr4:44299343-45200700	Active TSS Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1013488	chr4:44543808-44976123	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv915992	chr4:44705614-44972966	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv878979	chr4:44871931-45102488	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:44915400-44918400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr4:44915400-44918400	Weak transcription	Brain Anterior Caudate	brain
3	chr4:44916200-44916800	Weak transcription	Aorta	Aorta

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