Variant report

Variant	rs13910
Chromosome Location	chr15:35145505-35145506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:35141567-35146083	K562	blood:	n/a	n/a
2	ZNF384	chr15:35145271-35145630	K562	blood:	n/a	n/a
3	ZNF384	chr15:35145285-35145537	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35141828..35144222-chr15:35145311..35148151,3	K562	blood:

Variant related genes	Relation type
ENSG00000259751	TF binding region
ENSG00000259751	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11552015	0.99[AFR][1000 genomes]
rs61741130	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7170851	1.00[ASW][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7171773	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs74008003	1.00[AMR][1000 genomes]
rs74009741	1.00[AFR][1000 genomes]
rs74009743	1.00[AMR][1000 genomes]
rs74009744	1.00[AFR][1000 genomes]
rs74009745	1.00[AFR][1000 genomes]
rs74009747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74009748	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35129200-35147600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:35130000-35145600	Weak transcription	A549	lung
3	chr15:35130200-35147800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr15:35130400-35147600	Weak transcription	NHLF	lung
5	chr15:35134000-35145600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr15:35134000-35147400	Weak transcription	NHDF-Ad	bronchial
7	chr15:35134600-35147600	Weak transcription	HSMM	muscle
8	chr15:35134800-35147400	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:35139600-35148000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr15:35140200-35146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr15:35140400-35146800	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:35140600-35148000	Weak transcription	NHEK	skin
14	chr15:35140800-35146600	Weak transcription	Fetal Intestine Large	intestine
15	chr15:35140800-35147200	Weak transcription	Thymus	Thymus
16	chr15:35140800-35147400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr15:35141000-35146800	Weak transcription	NH-A	brain
18	chr15:35141000-35147200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr15:35141000-35148000	Weak transcription	Fetal Brain Female	brain
20	chr15:35141400-35147200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:35141600-35154800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:35141800-35146600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:35141800-35153400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr15:35142000-35146600	Weak transcription	Primary B cells from cord blood	blood
25	chr15:35142000-35147600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr15:35142600-35145600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr15:35142600-35146800	Weak transcription	K562	blood
28	chr15:35142600-35149000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr15:35142600-35149000	Weak transcription	Fetal Intestine Small	intestine
30	chr15:35142600-35149400	Weak transcription	Pancreas	Pancrea
31	chr15:35142600-35153400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:35142600-35156400	Weak transcription	Lung	lung
33	chr15:35142600-35180200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr15:35142600-35185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr15:35142800-35147000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:35143000-35147600	Weak transcription	HMEC	breast
37	chr15:35143400-35146200	Enhancers	Fetal Lung	lung
38	chr15:35143400-35147200	Weak transcription	HSMMtube	muscle
39	chr15:35143400-35147400	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr15:35143600-35148000	Weak transcription	Placenta	Placenta
41	chr15:35143800-35145600	Weak transcription	Monocytes-CD14+_RO01746	blood
42	chr15:35143800-35147400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr15:35144000-35145600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr15:35144000-35145800	Enhancers	Brain Germinal Matrix	brain
45	chr15:35144000-35147800	Weak transcription	GM12878-XiMat	blood
46	chr15:35144200-35146400	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr15:35144200-35146600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr15:35144400-35146800	Weak transcription	Primary neutrophils fromperipheralblood	blood
49	chr15:35144600-35146800	Weak transcription	Primary B cells from peripheral blood	blood
50	chr15:35144800-35146000	Enhancers	Brain Hippocampus Middle	brain

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