Variant report

Variant	rs139106582
Chromosome Location	chr4:166004538-166004539
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 92 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:92 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026152	chr4:165622244-166027447	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv537336	chr4:165622244-166027447	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv1022210	chr4:165792630-166251612	Genic enhancers Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
4	nsv537337	chr4:165792630-166251612	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
5	nsv1021905	chr4:165852926-166212878	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
6	nsv533191	chr4:165879671-166171638	Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	esv1835468	chr4:165969625-166023258	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
8	esv1840053	chr4:165969625-166023258	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	n/a
9	nsv881168	chr4:165975122-166196438	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
10	nsv596041	chr4:166000195-166004855	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	n/a
11	nsv511271	chr4:166000195-166010815	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv1000719	chr4:166000402-166010151	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3464603	chr4:166000902-166007000	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3521733	chr4:166001152-166006050	Weak transcription Strong transcription Enhancers	n/a	n/a	inside rSNPs	n/a
15	esv3464598	chr4:166001527-166006375	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3521736	chr4:166001802-166006200	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3521735	chr4:166002083-166006075	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
18	esv2558277	chr4:166002192-166005928	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
19	esv3464602	chr4:166002203-166005863	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	n/a
20	esv3521734	chr4:166002210-166006592	Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
21	nsv980162	chr4:166002372-166004816	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
22	nsv513175	chr4:166002400-166005231	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
23	esv3464604	chr4:166002402-166005600	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
24	esv3521732	chr4:166002439-166005218	Strong transcription Weak transcription	n/a	n/a	inside rSNPs	n/a
25	esv3464600	chr4:166002490-166005152	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
26	esv3464601	chr4:166002495-166005166	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
27	esv3521738	chr4:166002532-166005136	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
28	esv3521739	chr4:166002533-166005136	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
29	esv3521737	chr4:166002533-166005153	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
30	esv3464599	chr4:166002553-166005134	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
31	esv3464605	chr4:166002640-166005114	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
32	nsv820721	chr4:166003231-166005097	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
33	nsv822817	chr4:166003231-166005097	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
34	esv993088	chr4:166003442-166004827	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
35	esv11058	chr4:166003442-166004889	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
36	esv1006745	chr4:166003463-166005097	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
37	nsv822818	chr4:166003463-166005097	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
38	esv1793281	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
39	esv1799817	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
40	esv1809032	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
41	esv1811400	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
42	esv1812382	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
43	esv1812538	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
44	esv1828154	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
45	esv1831170	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
46	esv1834936	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
47	esv1835737	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
48	esv1837888	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
49	esv1838285	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a
50	esv1840100	chr4:166003471-166004657	Weak transcription Strong transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:165979000-166005600	Weak transcription	Pancreas	Pancrea
2	chr4:165980600-166005800	Weak transcription	Aorta	Aorta
3	chr4:165980600-166007000	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:165985000-166007200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr4:165990600-166007000	Weak transcription	Right Ventricle	heart
6	chr4:165990800-166026600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr4:165991600-166008400	Weak transcription	Colon Smooth Muscle	Colon
8	chr4:165993600-166007000	Weak transcription	Fetal Lung	lung
9	chr4:165994200-166007800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:165994200-166008600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr4:165994400-166006600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr4:165994600-166006000	Weak transcription	Placenta	Placenta
13	chr4:165994600-166032800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:165994800-166005600	Weak transcription	Fetal Brain Female	brain
15	chr4:165994800-166006400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:165994800-166007400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:165995400-166019600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:165995600-166005400	Weak transcription	Lung	lung
19	chr4:165995800-166005200	Weak transcription	Spleen	Spleen
20	chr4:165995800-166005600	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:165995800-166007000	Weak transcription	K562	blood
22	chr4:165996000-166007000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr4:165996000-166019800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr4:165996000-166033000	Weak transcription	Thymus	Thymus
25	chr4:165996200-166007000	Weak transcription	Fetal Kidney	kidney
26	chr4:165996200-166008200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr4:165996600-166006400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
28	chr4:165996600-166009400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
29	chr4:165996800-166032600	Weak transcription	Hela-S3	cervix
30	chr4:165997200-166006000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:165997400-166005200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
32	chr4:165997400-166018600	Strong transcription	Monocytes-CD14+_RO01746	blood
33	chr4:165997800-166007000	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:165997800-166007000	Weak transcription	GM12878-XiMat	blood
35	chr4:165997800-166032400	Weak transcription	Fetal Brain Male	brain
36	chr4:165998000-166006600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr4:165998000-166006800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:165998800-166007000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:165998800-166007000	Weak transcription	Brain Germinal Matrix	brain
40	chr4:165999000-166005200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:165999000-166007200	Weak transcription	H9 Cell Line	embryonic stem cell
42	chr4:165999000-166007400	Weak transcription	HMEC	breast
43	chr4:165999000-166009000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr4:165999000-166022800	Weak transcription	HUVEC	blood vessel
45	chr4:165999000-166023000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr4:165999200-166009000	Weak transcription	Rectal Smooth Muscle	rectum
47	chr4:165999200-166020600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr4:165999400-166007000	Weak transcription	HSMMtube	muscle
49	chr4:165999400-166007800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr4:165999400-166008200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links