Variant report

Variant	rs139112881
Chromosome Location	chr10:4856870-4856871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4855444..4858431-chr10:5530481..5532071,2	MCF-7	breast:
2	chr10:4856147..4859117-chr10:5323721..5326556,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	esv1805102	chr10:4856852-4858356	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv1806530	chr10:4856852-4858356	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4853200-4857800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:4854600-4857600	Enhancers	Osteobl	bone
3	chr10:4855000-4857200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4855000-4857200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr10:4855400-4857000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr10:4855400-4857000	Weak transcription	Esophagus	oesophagus
7	chr10:4855400-4867400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr10:4855600-4857000	Weak transcription	K562	blood
9	chr10:4855600-4857200	Weak transcription	NHEK	skin
10	chr10:4855600-4857400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr10:4855600-4862800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr10:4855800-4857200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr10:4856600-4857000	Enhancers	A549	lung
14	chr10:4856600-4857000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:4856600-4857000	Enhancers	NHDF-Ad	bronchial
16	chr10:4856600-4857600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:4856800-4857000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr10:4856800-4857200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:4856800-4857200	Enhancers	HepG2	liver
20	chr10:4856800-4857600	Enhancers	HMEC	breast
21	chr10:4856800-4857600	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links