Variant report

Variant	rs1391154
Chromosome Location	chr3:98048554-98048555
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:98043669..98046299-chr3:98046855..98049975,3	K562	blood:
2	chr3:97758056..97758983-chr3:98048226..98049035,3	MCF-7	breast:
3	chr3:97757871..97759038-chr3:98048078..98048948,5	K562	blood:
4	chr3:97757588..97759255-chr3:98048075..98049104,20	MCF-7	breast:
5	chr3:97907135..97908282-chr3:98048120..98049025,6	MCF-7	breast:
6	chr3:98047998..98048939-chr3:98062458..98063084,2	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1011205	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10935332	0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1391153	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1391155	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566167	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs16839214	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16839613	0.82[ASN][1000 genomes]
rs16839628	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16839655	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1908996	0.84[EUR][1000 genomes]
rs2316275	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2316277	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4465980	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4857369	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4857374	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4857375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56696178	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57336721	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs57884486	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58578727	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58642779	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs60198731	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62267367	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6439791	0.83[ASN][1000 genomes]
rs6439794	0.84[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6765369	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6777938	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6790063	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6793474	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6796881	0.88[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6800832	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72487752	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73856555	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7433424	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs986168	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869347	chr3:97742604-98051633	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv877209	chr3:97806616-98049409	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1004820	chr3:97852875-98169488	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	nsv1000834	chr3:97859880-98095473	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	esv1842860	chr3:97934241-98075543	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv1009918	chr3:97946030-98155450	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98046000-98048600	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr3:98046400-98049000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr3:98047000-98048600	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr3:98047600-98048600	Enhancers	GM12878-XiMat	blood
5	chr3:98047800-98048600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:98048000-98049000	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:98048200-98048600	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr3:98048200-98048600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr3:98048200-98048600	Enhancers	Brain Angular Gyrus	brain
10	chr3:98048200-98048600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
11	chr3:98048200-98048800	Enhancers	Brain Cingulate Gyrus	brain
12	chr3:98048200-98049000	Enhancers	Brain Hippocampus Middle	brain
13	chr3:98048400-98048600	Enhancers	Primary T cells fromperipheralblood	blood

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