Variant report

Variant	rs139125247
Chromosome Location	chr1:94545361-94545362
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94541971..94545495-chr1:94547470..94549927,3	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871057	chr1:94513142-94577286	ZNF genes & repeats Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv871558	chr1:94544276-94576968	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv870555	chr1:94545160-94577744	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94535800-94547000	Weak transcription	NHDF-Ad	bronchial
2	chr1:94536400-94556400	Weak transcription	Right Atrium	heart
3	chr1:94539600-94546800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:94539600-94546800	Weak transcription	Dnd41	blood
5	chr1:94539600-94547000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr1:94539600-94548600	Weak transcription	Thymus	Thymus
7	chr1:94541600-94550400	Weak transcription	Spleen	Spleen
8	chr1:94543200-94545800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr1:94543600-94546000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr1:94543600-94546000	Enhancers	Fetal Kidney	kidney
11	chr1:94543600-94546600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:94543800-94545800	Enhancers	Fetal Muscle Leg	muscle
13	chr1:94543800-94546200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr1:94543800-94546400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:94544200-94545400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr1:94544200-94545800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:94544200-94545800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr1:94544400-94545800	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr1:94544400-94545800	Enhancers	Brain Germinal Matrix	brain
20	chr1:94544400-94546000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr1:94544400-94546000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:94544600-94545800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr1:94544600-94545800	Enhancers	Fetal Thymus	thymus
24	chr1:94544800-94545400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:94544800-94546800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr1:94545000-94545600	Weak transcription	Brain Angular Gyrus	brain
27	chr1:94545000-94546000	Enhancers	Adipose Nuclei	Adipose
28	chr1:94545000-94546400	Enhancers	HepG2	liver
29	chr1:94545000-94547000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr1:94545000-94547200	Weak transcription	Lung	lung
31	chr1:94545000-94547200	Weak transcription	HSMMtube	muscle
32	chr1:94545000-94547200	Weak transcription	NHLF	lung
33	chr1:94545000-94549600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr1:94545200-94545800	Weak transcription	NH-A	brain

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