Variant report

Variant	rs139150772
Chromosome Location	chr18:45662459-45662460
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45610278..45611790-chr18:45660940..45662780,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3337566	chr18:45661104-45665102	Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45660400-45662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr18:45660400-45662600	Enhancers	Dnd41	blood
3	chr18:45660800-45665000	Active TSS	Rectal Smooth Muscle	rectum
4	chr18:45661400-45663800	Active TSS	Esophagus	oesophagus
5	chr18:45661800-45662600	Enhancers	Lung	lung
6	chr18:45661800-45662800	Bivalent Enhancer	Fetal Brain Male	brain
7	chr18:45661800-45664000	Active TSS	Colonic Mucosa	Colon
8	chr18:45662000-45662600	Bivalent/Poised TSS	Fetal Lung	lung
9	chr18:45662000-45662600	Active TSS	Sigmoid Colon	Sigmoid Colon
10	chr18:45662000-45663000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
11	chr18:45662000-45663200	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr18:45662000-45663200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
13	chr18:45662000-45663200	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
14	chr18:45662000-45663200	Flanking Active TSS	Placenta	Placenta
15	chr18:45662000-45663400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
16	chr18:45662000-45663400	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr18:45662000-45663400	Active TSS	Duodenum Mucosa	Duodenum
18	chr18:45662000-45663400	Bivalent/Poised TSS	Small Intestine	intestine
19	chr18:45662000-45663600	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
20	chr18:45662000-45663600	Active TSS	Right Atrium	heart
21	chr18:45662000-45663800	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
22	chr18:45662000-45663800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
23	chr18:45662000-45663800	Active TSS	Brain Anterior Caudate	brain
24	chr18:45662000-45663800	Active TSS	Gastric	stomach
25	chr18:45662000-45664000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
26	chr18:45662000-45664000	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
27	chr18:45662000-45664000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
28	chr18:45662000-45664000	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
29	chr18:45662000-45664000	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr18:45662000-45664000	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
31	chr18:45662000-45664000	Active TSS	Fetal Kidney	kidney
32	chr18:45662000-45664000	Active TSS	Rectal Mucosa Donor 31	rectum
33	chr18:45662000-45664200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
34	chr18:45662200-45662600	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
35	chr18:45662200-45662600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
36	chr18:45662200-45662600	Flanking Active TSS	Ovary	ovary
37	chr18:45662200-45662600	Enhancers	Pancreas	Pancrea
38	chr18:45662200-45662600	Active TSS	Psoas Muscle	Psoas
39	chr18:45662200-45662800	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
40	chr18:45662200-45662800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
41	chr18:45662200-45662800	Bivalent Enhancer	Thymus	Thymus
42	chr18:45662200-45663000	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr18:45662200-45663000	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
44	chr18:45662200-45663000	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
45	chr18:45662200-45663000	Active TSS	Skeletal Muscle Female	skeletal muscle
46	chr18:45662200-45663200	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr18:45662200-45663200	Flanking Active TSS	Liver	Liver
48	chr18:45662200-45663200	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
49	chr18:45662200-45663400	Bivalent/Poised TSS	Colon Smooth Muscle	Colon
50	chr18:45662200-45663600	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links