Variant report

Variant	rs139163867
Chromosome Location	chr16:82093188-82093189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82069797..82071329-chr16:82092897..82095086,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907012	chr16:81986896-82115148	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1058368	chr16:82029516-82152788	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
4	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
5	nsv1061709	chr16:82093183-82159867	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82076600-82094800	Enhancers	Fetal Intestine Large	intestine
2	chr16:82086200-82103800	Weak transcription	Gastric	stomach
3	chr16:82089400-82093800	Weak transcription	Lung	lung
4	chr16:82089400-82105800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr16:82089600-82103800	Weak transcription	Pancreas	Pancrea
6	chr16:82090000-82093400	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr16:82090200-82093400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr16:82090600-82095400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr16:82090600-82095800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr16:82090600-82095800	Weak transcription	NHEK	skin
11	chr16:82090800-82101000	Enhancers	HepG2	liver
12	chr16:82091400-82093200	Weak transcription	HMEC	breast
13	chr16:82091400-82095000	Enhancers	Placenta	Placenta
14	chr16:82091600-82094000	Enhancers	Duodenum Mucosa	Duodenum
15	chr16:82092000-82093800	Enhancers	Small Intestine	intestine
16	chr16:82092000-82095000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr16:82092000-82096400	Enhancers	Fetal Intestine Small	intestine
18	chr16:82092200-82094200	Enhancers	Breast Myoepithelial Primary Cells	Breast
19	chr16:82092200-82094200	Enhancers	Stomach Mucosa	stomach
20	chr16:82092400-82094400	Enhancers	NHDF-Ad	bronchial
21	chr16:82092400-82094400	Enhancers	NHLF	lung
22	chr16:82092600-82093200	Weak transcription	Colonic Mucosa	Colon
23	chr16:82092800-82093400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr16:82092800-82094000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr16:82092800-82094600	Enhancers	Rectal Mucosa Donor 29	rectum
26	chr16:82093000-82093200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr16:82093000-82093200	Bivalent Enhancer	HSMMtube	muscle
28	chr16:82093000-82093600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr16:82093000-82093600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr16:82093000-82093800	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr16:82093000-82094600	Flanking Active TSS	Liver	Liver

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