Variant report

Variant	rs139217278
Chromosome Location	chr4:76949730-76949731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:76946437..76948310-chr4:76949313..76951131,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3353539	chr4:76530136-76993859	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv529613	chr4:76654941-77081576	Flanking Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
3	nsv1004627	chr4:76793910-76999584	Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
4	esv3342370	chr4:76947428-76950226	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3430656	chr4:76947878-76950076	Flanking Active TSS Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv19222	chr4:76948569-76977780	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv1821339	chr4:76948817-76955927	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv1802071	chr4:76948817-76972594	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76949200-76949800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr4:76949200-76949800	Active TSS	Rectal Mucosa Donor 29	rectum
3	chr4:76949200-76950000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr4:76949200-76950000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr4:76949200-76950000	Active TSS	Stomach Smooth Muscle	stomach
6	chr4:76949200-76950000	Flanking Active TSS	HUVEC	blood vessel
7	chr4:76949200-76950200	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:76949200-76950200	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr4:76949400-76949800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr4:76949400-76949800	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr4:76949400-76949800	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:76949400-76949800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr4:76949400-76949800	Active TSS	Adipose Nuclei	Adipose
14	chr4:76949400-76949800	Active TSS	Brain Anterior Caudate	brain
15	chr4:76949400-76949800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:76949400-76949800	Active TSS	Colon Smooth Muscle	Colon
17	chr4:76949400-76949800	Active TSS	Ovary	ovary
18	chr4:76949400-76949800	Active TSS	Right Atrium	heart
19	chr4:76949400-76949800	Active TSS	Right Ventricle	heart
20	chr4:76949400-76949800	Active TSS	Stomach Mucosa	stomach
21	chr4:76949400-76949800	Active TSS	NHDF-Ad	bronchial
22	chr4:76949400-76950000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
23	chr4:76949400-76950000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr4:76949400-76950000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:76949400-76950000	Active TSS	Brain Cingulate Gyrus	brain
26	chr4:76949400-76950000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
27	chr4:76949400-76950000	Enhancers	Fetal Brain Female	brain
28	chr4:76949400-76950000	Active TSS	Fetal Kidney	kidney
29	chr4:76949400-76950000	Active TSS	Fetal Lung	lung
30	chr4:76949400-76950200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
31	chr4:76949400-76950200	Active TSS	Brain Hippocampus Middle	brain
32	chr4:76949400-76950200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
33	chr4:76949600-76949800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:76949600-76949800	Flanking Active TSS	Primary T cells from cord blood	blood
35	chr4:76949600-76949800	Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr4:76949600-76949800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:76949600-76949800	Active TSS	Esophagus	oesophagus
38	chr4:76949600-76949800	Active TSS	Fetal Intestine Small	intestine
39	chr4:76949600-76949800	Active TSS	Left Ventricle	heart
40	chr4:76949600-76949800	Active TSS	Rectal Mucosa Donor 31	rectum
41	chr4:76949600-76949800	Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr4:76949600-76949800	Bivalent Enhancer	Dnd41	blood
43	chr4:76949600-76949800	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood
44	chr4:76949600-76949800	Active TSS	HMEC	breast
45	chr4:76949600-76950000	Enhancers	Primary T cells fromperipheralblood	blood
46	chr4:76949600-76950000	Flanking Active TSS	Primary hematopoietic stem cells	blood
47	chr4:76949600-76950000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
48	chr4:76949600-76950000	Enhancers	Primary T helper naive cells from peripheral blood	blood
49	chr4:76949600-76950000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
50	chr4:76949600-76950000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--

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