Variant report

Variant	rs139228874
Chromosome Location	chr2:100754638-100754639
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv582530	chr2:100739970-100774287	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv527481	chr2:100753490-100763006	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100746200-100764800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:100747200-100758400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr2:100751200-100755400	Genic enhancers	Primary B cells from peripheral blood	blood
4	chr2:100751400-100757000	Enhancers	Primary hematopoietic stem cells	blood
5	chr2:100751600-100756600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr2:100752600-100758200	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr2:100753000-100758400	Weak transcription	Spleen	Spleen
8	chr2:100753600-100755000	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
9	chr2:100753600-100756000	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr2:100753600-100756000	Enhancers	Fetal Thymus	thymus
11	chr2:100753600-100757800	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr2:100753600-100758200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
13	chr2:100753800-100755000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr2:100753800-100755600	Enhancers	Primary T cells fromperipheralblood	blood
15	chr2:100753800-100756200	Enhancers	Thymus	Thymus
16	chr2:100753800-100757800	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr2:100753800-100759800	Flanking Active TSS	Dnd41	blood
18	chr2:100754000-100754800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr2:100754000-100754800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr2:100754000-100754800	Enhancers	Lung	lung
21	chr2:100754000-100755000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr2:100754000-100758200	Enhancers	Primary T helper naive cells from peripheral blood	blood
23	chr2:100754200-100754800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr2:100754400-100754800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr2:100754400-100754800	Enhancers	Brain Germinal Matrix	brain
26	chr2:100754400-100758400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr2:100754400-100758400	Enhancers	Monocytes-CD14+_RO01746	blood
28	chr2:100754600-100754800	Enhancers	Primary T cells from cord blood	blood
29	chr2:100754600-100754800	Flanking Bivalent TSS/Enh	GM12878-XiMat	blood

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