Variant report

Variant	rs139234860
Chromosome Location	chr6:37775559-37775560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:37756505..37762867-chr6:37772774..37778127,6	MCF-7	breast:
2	chr6:37774211..37776209-chr6:37780376..37782205,2	MCF-7	breast:
3	chr6:37774109..37776209-chr6:37784418..37787142,2	K562	blood:
4	chr6:37773348..37778942-chr6:37784434..37789284,15	MCF-7	breast:
5	chr6:37775388..37777392-chr6:37792232..37794017,2	MCF-7	breast:
6	chr6:37771553..37779758-chr6:37784024..37789413,23	MCF-7	breast:
7	chr6:37761178..37763195-chr6:37774802..37776873,2	MCF-7	breast:
8	chr6:37770736..37773178-chr6:37775480..37777364,3	K562	blood:
9	chr6:37773868..37777488-chr6:37778348..37782159,4	K562	blood:
10	chr6:37772786..37776209-chr6:37782926..37786197,4	K562	blood:
11	chr6:37774048..37775652-chr6:37787491..37789731,2	K562	blood:
12	chr6:37770736..37773178-chr6:37775480..37777289,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000225945	Chromatin interaction
ENSG00000156639	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1024016	chr6:37567651-37981590	Weak transcription Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	esv3340848	chr6:37775510-37775744	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:37767400-37777000	Weak transcription	Right Atrium	heart
2	chr6:37769600-37776800	Weak transcription	Liver	Liver
3	chr6:37772600-37776800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:37773000-37776800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:37774600-37775600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:37774600-37777400	Enhancers	Fetal Brain Male	brain
7	chr6:37774800-37776400	Enhancers	Fetal Brain Female	brain
8	chr6:37775000-37775800	Enhancers	Brain Germinal Matrix	brain
9	chr6:37775200-37775600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr6:37775200-37775600	Enhancers	NHEK	skin
11	chr6:37775200-37775800	Enhancers	Esophagus	oesophagus
12	chr6:37775200-37776200	Enhancers	Brain Angular Gyrus	brain
13	chr6:37775200-37776200	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr6:37775200-37777400	Enhancers	Fetal Kidney	kidney
15	chr6:37775200-37777400	Enhancers	Fetal Muscle Leg	muscle
16	chr6:37775200-37777400	Enhancers	HSMMtube	muscle
17	chr6:37775200-37777600	Enhancers	HMEC	breast
18	chr6:37775400-37775600	Enhancers	Fetal Muscle Trunk	muscle
19	chr6:37775400-37775800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:37775400-37775800	Enhancers	Brain Cingulate Gyrus	brain
21	chr6:37775400-37775800	Enhancers	Psoas Muscle	Psoas
22	chr6:37775400-37776000	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr6:37775400-37776000	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
24	chr6:37775400-37776000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:37775400-37776000	Enhancers	Brain Anterior Caudate	brain
26	chr6:37775400-37776000	Enhancers	Ovary	ovary
27	chr6:37775400-37776200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr6:37775400-37776200	Enhancers	Brain Hippocampus Middle	brain
29	chr6:37775400-37776400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr6:37775400-37776400	Enhancers	HSMM	muscle
31	chr6:37775400-37776600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
32	chr6:37775400-37777200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr6:37775400-37777400	Enhancers	Placenta	Placenta
34	chr6:37775400-37777400	Enhancers	Skeletal Muscle Male	skeletal muscle
35	chr6:37775400-37777400	Enhancers	Skeletal Muscle Female	skeletal muscle
36	chr6:37775400-37777600	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr6:37775400-37777600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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