Variant report

Variant	rs139236587
Chromosome Location	chr17:17270153-17270154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
4	nsv1061186	chr17:17200427-17314406	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	14 gene(s)	inside rSNPs	diseases
5	esv275128	chr17:17269758-17275754	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17267800-17279400	Weak transcription	Right Ventricle	heart
2	chr17:17268000-17271200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr17:17268200-17271000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr17:17268200-17272800	Weak transcription	Fetal Intestine Large	intestine
5	chr17:17268800-17270400	ZNF genes & repeats	Fetal Thymus	thymus
6	chr17:17269000-17270400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr17:17269400-17270200	Weak transcription	Osteobl	bone
8	chr17:17269800-17270800	Enhancers	Muscle Satellite Cultured Cells	--
9	chr17:17269800-17271600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:17270000-17270200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr17:17270000-17270200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr17:17270000-17270200	Enhancers	HepG2	liver
13	chr17:17270000-17270400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr17:17270000-17270400	Enhancers	Fetal Muscle Trunk	muscle
15	chr17:17270000-17270400	Enhancers	Right Atrium	heart
16	chr17:17270000-17270600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr17:17270000-17271400	Enhancers	Adipose Nuclei	Adipose
18	chr17:17270000-17271400	Enhancers	NHDF-Ad	bronchial
19	chr17:17270000-17271600	Enhancers	HSMM	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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