Variant report

Variant	rs139238514
Chromosome Location	chr9:17330911-17330912
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024799	chr9:16631890-17431827	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	esv2764141	chr9:16903446-17351711	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv892658	chr9:17041557-17532840	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv892661	chr9:17134245-17532840	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	nsv613693	chr9:17147191-17710407	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv471287	chr9:17165698-17708814	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv466269	chr9:17165698-17710407	Weak transcription ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
8	nsv466270	chr9:17236376-17377629	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv613694	chr9:17236376-17377629	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv892665	chr9:17250170-17371690	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
11	nsv613695	chr9:17273731-17348412	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
12	nsv466271	chr9:17329964-17438391	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv613696	chr9:17329964-17438391	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:17262800-17339800	Weak transcription	Left Ventricle	heart
2	chr9:17284400-17344800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr9:17292200-17367200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr9:17294000-17334000	Weak transcription	Fetal Stomach	stomach
5	chr9:17294000-17346000	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:17301200-17332200	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr9:17313400-17333200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr9:17315400-17347400	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:17315400-17349800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr9:17318400-17334000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr9:17319000-17349800	Weak transcription	Osteobl	bone
12	chr9:17319400-17349800	Weak transcription	NH-A	brain
13	chr9:17320600-17333800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:17321600-17331600	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr9:17321600-17331600	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr9:17321600-17334600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr9:17321800-17340800	Weak transcription	HUVEC	blood vessel
18	chr9:17321800-17342800	Weak transcription	Pancreas	Pancrea
19	chr9:17323600-17342800	Weak transcription	Aorta	Aorta
20	chr9:17325800-17331400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr9:17327000-17349800	Weak transcription	Muscle Satellite Cultured Cells	--
22	chr9:17327800-17346200	Weak transcription	HSMM	muscle
23	chr9:17328800-17341400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:17329200-17367000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:17330200-17342600	Weak transcription	Ovary	ovary
26	chr9:17330200-17350200	Weak transcription	NHDF-Ad	bronchial
27	chr9:17330200-17367000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr9:17330400-17346000	Weak transcription	Fetal Lung	lung
29	chr9:17330600-17334800	Strong transcription	Liver	Liver
30	chr9:17330600-17350800	Weak transcription	Fetal Kidney	kidney

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