Variant report

Variant	rs139243739
Chromosome Location	chr2:86620508-86620509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:86616684..86621383-chr2:86622282..86625754,5	K562	blood:
2	chr2:86619507..86623794-chr2:86667300..86670065,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115548	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3412938	chr2:86370969-86867936	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
2	esv18769	chr2:86619882-86620685	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:86619600-86620800	Enhancers	Left Ventricle	heart
2	chr2:86619600-86621200	Enhancers	Fetal Muscle Leg	muscle
3	chr2:86619600-86621600	Enhancers	Fetal Intestine Large	intestine
4	chr2:86619600-86622000	Enhancers	Fetal Intestine Small	intestine
5	chr2:86619800-86621800	Enhancers	HSMMtube	muscle
6	chr2:86619800-86622800	Enhancers	Psoas Muscle	Psoas
7	chr2:86620000-86621000	Enhancers	Duodenum Mucosa	Duodenum
8	chr2:86620000-86621000	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr2:86620000-86621600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr2:86620000-86621600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr2:86620000-86621600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:86620000-86621600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr2:86620000-86621600	Enhancers	Colonic Mucosa	Colon
14	chr2:86620000-86621600	Enhancers	HSMM	muscle
15	chr2:86620200-86621000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr2:86620200-86621200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr2:86620200-86621400	Enhancers	Fetal Lung	lung
18	chr2:86620200-86621400	Enhancers	Stomach Mucosa	stomach
19	chr2:86620200-86621600	Enhancers	Primary T cells from cord blood	blood
20	chr2:86620200-86621600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr2:86620200-86621600	Enhancers	Fetal Thymus	thymus
22	chr2:86620200-86621600	Enhancers	Pancreas	Pancrea
23	chr2:86620200-86621600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr2:86620200-86621600	Enhancers	Hela-S3	cervix
25	chr2:86620200-86621800	Enhancers	Skeletal Muscle Female	skeletal muscle
26	chr2:86620400-86621200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr2:86620400-86621200	Flanking Active TSS	Fetal Heart	heart
28	chr2:86620400-86621200	Enhancers	Small Intestine	intestine
29	chr2:86620400-86621200	Enhancers	NHEK	skin
30	chr2:86620400-86621400	Enhancers	Primary hematopoietic stem cells	blood
31	chr2:86620400-86621400	Enhancers	Rectal Mucosa Donor 29	rectum
32	chr2:86620400-86621600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr2:86620400-86621600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr2:86620400-86621600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr2:86620400-86621600	Enhancers	Brain Anterior Caudate	brain
36	chr2:86620400-86621600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr2:86620400-86621600	Enhancers	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links