Variant report

Variant	rs1392611
Chromosome Location	chr4:45349324-45349325
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10001022	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs10020709	0.82[ASN][1000 genomes]
rs10517132	0.86[ASN][1000 genomes]
rs12647569	0.86[ASN][1000 genomes]
rs13148237	0.86[ASN][1000 genomes]
rs28877332	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4538526	0.85[ASN][1000 genomes]
rs4695097	0.86[ASN][1000 genomes]
rs4695100	0.86[ASN][1000 genomes]
rs4695107	0.82[ASN][1000 genomes]
rs56159503	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57144588	0.96[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6825666	0.86[ASN][1000 genomes]
rs6826550	0.86[ASN][1000 genomes]
rs6826745	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv594107	chr4:45338240-45436394	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45347600-45349400	Enhancers	Stomach Mucosa	stomach
2	chr4:45348000-45352000	Weak transcription	Brain Substantia Nigra	brain
3	chr4:45348600-45349400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr4:45348600-45349400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr4:45348800-45349400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:45349000-45349400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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