Variant report

Variant	rs1392785
Chromosome Location	chr3:112689537-112689538
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1032726	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12494693	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4103791	0.82[CEU][hapmap]
rs4682125	0.82[CEU][hapmap]
rs6438120	0.82[CEU][hapmap]
rs6438122	0.82[CEU][hapmap]
rs6769091	0.81[CEU][hapmap]
rs6784838	0.82[CEU][hapmap]
rs7611690	0.83[CEU][hapmap]
rs7615462	0.85[CEU][hapmap]
rs7615572	0.82[CEU][hapmap]
rs7646849	0.82[CEU][hapmap]
rs9823363	0.82[CEU][hapmap]
rs9833991	0.82[CEU][hapmap]
rs9834353	0.82[CEU][hapmap]
rs9864295	0.82[CEU][hapmap]
rs9871985	0.82[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3431441	chr3:112453467-113213252	Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	esv1843165	chr3:112628205-112740145	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1392785	CD200R1	cis	multi-tissue	Pritchard

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:112683000-112691400	Weak transcription	Adipose Nuclei	Adipose
2	chr3:112684200-112693000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:112685000-112690600	Enhancers	Primary T cells from cord blood	blood
4	chr3:112685600-112690200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr3:112685600-112690400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr3:112685600-112691000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr3:112685600-112691400	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr3:112685800-112691200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr3:112686000-112690800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr3:112686200-112691400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr3:112687400-112691600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr3:112687600-112692600	Weak transcription	Primary hematopoietic stem cells	blood
13	chr3:112688200-112692200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr3:112688400-112690200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr3:112688400-112691400	Weak transcription	Primary B cells from cord blood	blood
16	chr3:112688600-112689800	Weak transcription	GM12878-XiMat	blood
17	chr3:112688600-112691200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr3:112688600-112691400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
19	chr3:112688800-112690200	Weak transcription	Primary B cells from peripheral blood	blood
20	chr3:112688800-112691200	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr3:112688800-112692200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr3:112689000-112690200	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr3:112689400-112689600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
24	chr3:112689400-112689800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
25	chr3:112689400-112691000	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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