Variant report

Variant	rs139296659
Chromosome Location	chr11:71816745-71816746
allele	-/GGT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:71816729-71817263	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:71749829..71754834-chr11:71810770..71817366,12	MCF-7	breast:
2	chr11:71815942..71818522-chr11:71943866..71946809,2	K562	blood:

Variant related genes	Relation type
LAMTOR1	TF binding region
LRTOMT	TF binding region
ENSG00000137497	Chromatin interaction
ENSG00000165458	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases
2	nsv983187	chr11:71815746-71821103	Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71814800-71818600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:71814800-71820200	Weak transcription	Aorta	Aorta
3	chr11:71814800-71822600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:71815000-71816800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:71815000-71817000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr11:71815000-71817000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:71815000-71818400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr11:71815000-71818400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr11:71815000-71818400	Weak transcription	Gastric	stomach
10	chr11:71815000-71818400	Weak transcription	Ovary	ovary
11	chr11:71815000-71818800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:71815000-71819000	Weak transcription	Esophagus	oesophagus
13	chr11:71815000-71820400	Weak transcription	Colonic Mucosa	Colon
14	chr11:71815000-71820800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:71815000-71822200	Weak transcription	HSMMtube	muscle
16	chr11:71815000-71822400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:71815000-71822400	Weak transcription	HMEC	breast
18	chr11:71815000-71822400	Weak transcription	HUVEC	blood vessel
19	chr11:71815000-71822600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr11:71815000-71822800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:71815000-71822800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr11:71815000-71823000	Weak transcription	Small Intestine	intestine
23	chr11:71815200-71816800	Weak transcription	Brain Germinal Matrix	brain
24	chr11:71815200-71817000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr11:71815200-71817200	Weak transcription	Fetal Muscle Leg	muscle
26	chr11:71815200-71817200	Strong transcription	NHLF	lung
27	chr11:71815200-71818200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr11:71815200-71818200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr11:71815200-71818200	Weak transcription	Fetal Thymus	thymus
30	chr11:71815200-71818400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr11:71815200-71818400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:71815200-71818400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr11:71815200-71818400	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr11:71815200-71818400	Weak transcription	Fetal Stomach	stomach
35	chr11:71815200-71818400	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr11:71815200-71818400	Weak transcription	Thymus	Thymus
37	chr11:71815200-71818400	Weak transcription	NHEK	skin
38	chr11:71815200-71818600	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr11:71815200-71818600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:71815200-71818600	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:71815200-71818800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr11:71815200-71818800	Weak transcription	Adipose Nuclei	Adipose
43	chr11:71815200-71818800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr11:71815200-71818800	Weak transcription	Spleen	Spleen
45	chr11:71815200-71819000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr11:71815200-71819200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:71815200-71819200	Weak transcription	Placenta	Placenta
48	chr11:71815200-71819600	Weak transcription	Rectal Smooth Muscle	rectum
49	chr11:71815200-71819600	Weak transcription	Right Ventricle	heart
50	chr11:71815200-71820200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links