Variant report

Variant	rs139305734
Chromosome Location	chr15:40417488-40417489
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3364812	chr15:40414858-40427614	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3423229	chr15:40417126-40447686	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3500491	chr15:40417175-40446353	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3500492	chr15:40417175-40446353	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv974562	chr15:40417227-40427352	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
2	chr15:40415200-40418000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr15:40416400-40417800	Enhancers	Placenta	Placenta
4	chr15:40416400-40418600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:40416600-40417800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr15:40416600-40417800	Enhancers	NHEK	skin
7	chr15:40416600-40418000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:40416600-40418000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr15:40416600-40418000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:40416600-40418600	Enhancers	H9 Cell Line	embryonic stem cell
11	chr15:40416600-40418800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr15:40416800-40417600	Enhancers	HMEC	breast
13	chr15:40416800-40417800	Enhancers	Placenta Amnion	Placenta Amnion
14	chr15:40417000-40417600	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr15:40417000-40417800	Enhancers	Pancreas	Pancrea
16	chr15:40417000-40418000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:40417200-40417600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr15:40417200-40417600	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr15:40417400-40417600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
20	chr15:40417400-40417600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
21	chr15:40417400-40417600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links