Variant report

Variant	rs139348667
Chromosome Location	chr3:43596759-43596760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428738	chr3:43491435-43651168	Strong transcription Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	esv3335681	chr3:43596648-43600746	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43540200-43602200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr3:43544000-43617600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr3:43553000-43601600	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:43556200-43624800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:43558600-43625600	Weak transcription	Lung	lung
6	chr3:43560800-43618000	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:43561200-43601200	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr3:43561400-43600400	Weak transcription	Stomach Smooth Muscle	stomach
9	chr3:43561600-43601000	Weak transcription	Pancreas	Pancrea
10	chr3:43561800-43602000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr3:43571000-43613600	Weak transcription	Gastric	stomach
12	chr3:43573800-43601400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:43573800-43617800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr3:43574800-43662400	Weak transcription	Right Ventricle	heart
15	chr3:43576200-43601000	Weak transcription	Esophagus	oesophagus
16	chr3:43576200-43623800	Weak transcription	Psoas Muscle	Psoas
17	chr3:43576400-43613600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr3:43576400-43621200	Weak transcription	NHEK	skin
19	chr3:43577600-43625400	Weak transcription	HUVEC	blood vessel
20	chr3:43578200-43599800	Weak transcription	Fetal Brain Female	brain
21	chr3:43579200-43600200	Weak transcription	Liver	Liver
22	chr3:43580600-43647600	Weak transcription	Brain Angular Gyrus	brain
23	chr3:43580800-43613800	Weak transcription	Aorta	Aorta
24	chr3:43581800-43601400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr3:43582000-43601600	Weak transcription	HepG2	liver
26	chr3:43582200-43600600	Weak transcription	Placenta	Placenta
27	chr3:43582400-43607000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:43582600-43617800	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr3:43582800-43602200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr3:43584000-43632800	Weak transcription	Small Intestine	intestine
31	chr3:43584600-43614000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr3:43585600-43602200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr3:43585600-43624400	Weak transcription	Fetal Lung	lung
34	chr3:43585800-43598200	Weak transcription	Stomach Mucosa	stomach
35	chr3:43585800-43603800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr3:43585800-43617800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr3:43587000-43647200	Weak transcription	Fetal Kidney	kidney
38	chr3:43587200-43632000	Weak transcription	Fetal Muscle Trunk	muscle
39	chr3:43587800-43634000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr3:43588800-43617800	Weak transcription	Brain Anterior Caudate	brain
41	chr3:43589000-43618000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr3:43589000-43648400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr3:43589200-43617600	Weak transcription	Colonic Mucosa	Colon
44	chr3:43589600-43603400	Weak transcription	Fetal Brain Male	brain
45	chr3:43589600-43617400	Weak transcription	Primary T cells from cord blood	blood
46	chr3:43589600-43625600	Weak transcription	Brain Substantia Nigra	brain
47	chr3:43590000-43602200	Weak transcription	NHLF	lung
48	chr3:43590600-43611400	Weak transcription	Brain Germinal Matrix	brain
49	chr3:43590600-43636400	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr3:43591000-43601400	Weak transcription	Ovary	ovary

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