Variant report

Variant	rs139353513
Chromosome Location	chr15:74164754-74164755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:74164753-74164803	PrEC	prostate:	n/a
2	chr15:74164753-74164803	H1-hESC	embryonic stem cell:	embryo
3	chr15:74164753-74164803	NB4	blood:	n/a
4	chr15:74164753-74164803	HRE	kidney:	n/a
5	chr15:74164753-74164803	CMK	blood:	n/a
6	chr15:74164753-74164803	T-47D	breast:	n/a
7	chr15:74164753-74164803	AoSMC	blood vessel:	n/a
8	chr15:74164753-74164803	HRCEpiC	kidney:	n/a
9	chr15:74164753-74164803	HMEC	breast:	n/a
10	chr15:74164753-74164803	NHDF-neo	bronchial:	n/a
11	chr15:74164753-74164803	GM06990	blood:	n/a
12	chr15:74164753-74164803	GM19239	blood:	n/a
13	chr15:74164753-74164803	K562	blood:	n/a
14	chr15:74164753-74164803	Hela-S3	cervix:	n/a
15	chr15:74164753-74164803	GM12892	blood:	n/a
16	chr15:74164753-74164803	GM12878	blood:	n/a
17	chr15:74164753-74164803	HUVEC	blood vessel:	n/a
18	chr15:74164753-74164803	AG09309	skin:	n/a
19	chr15:74164753-74164803	SKMC	muscle:	n/a
20	chr15:74164753-74164803	HCF	heart:	n/a
21	chr15:74164753-74164803	U87	brain:	n/a
22	chr15:74164753-74164803	HNPCEpiC	eye:	n/a
23	chr15:74164753-74164803	AG04449	skin:	fetal
24	chr15:74164753-74164803	PFSK-1	brain:	n/a
25	chr15:74164753-74164803	SAEC	small airway:	n/a
26	chr15:74164753-74164803	SK-N-SH	brain:	n/a
27	chr15:74164753-74164803	Jurkat	blood:	n/a
28	chr15:74164753-74164803	AG10803	skin:	n/a
29	chr15:74164753-74164803	RPTEC	kidney:	n/a
30	chr15:74164753-74164803	LNCaP	prostate:	n/a
31	chr15:74164753-74164803	GM12891	blood:	n/a
32	chr15:74164753-74164803	Caco-2	colon:	n/a
33	chr15:74164753-74164803	HCM	heart:	n/a
34	chr15:74164753-74164803	ProgFib	skin:	n/a
35	chr15:74164753-74164803	HEEpiC	esophagus:	n/a
36	chr15:74164753-74164803	NT2-D1	testis:	n/a
37	chr15:74164753-74164803	HIPEpiC	eye:	n/a
38	chr15:74164753-74164803	HL-60	blood:	n/a
39	chr15:74164753-74164803	HEK293	kidney:	embryo
40	chr15:74164753-74164803	HepG2	liver:	n/a
41	chr15:74164753-74164803	PANC-1	pancreas:	n/a
42	chr15:74164753-74164803	MCF10A-Er-Src	breast:	n/a
43	chr15:74164753-74164803	SK-N-MC	brain:	n/a
44	chr15:74164753-74164803	AG09319	gingival:	n/a
45	chr15:74164753-74164803	HCT-116	colon:	n/a
46	chr15:74164753-74164803	SK-N-SH_RA	brain:	n/a
47	chr15:74164753-74164803	IMR90	lung:	fetal
48	chr15:74164753-74164803	HCPEpiC	choroid plexus:	n/a
49	chr15:74164753-74164803	AG04450	lung:	fetal
50	chr15:74164753-74164803	HRPEpiC	eye:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74163735..74170089-chr15:74218002..74222715,6	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000260624	CpG island
TBC1D21	CpG island
ENSG00000129038	Chromatin interaction
ENSG00000261801	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	esv3496464	chr15:74163499-74165397	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74162600-74164800	Enhancers	Fetal Intestine Small	intestine
3	chr15:74163200-74164800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:74163600-74164800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr15:74163600-74165200	Enhancers	Osteobl	bone
6	chr15:74163600-74165600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr15:74163800-74164800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:74164400-74165200	Enhancers	NHDF-Ad	bronchial
9	chr15:74164600-74164800	Bivalent Enhancer	Duodenum Mucosa	Duodenum
10	chr15:74164600-74164800	Enhancers	Left Ventricle	heart
11	chr15:74164600-74164800	Enhancers	Pancreas	Pancrea
12	chr15:74164600-74164800	Bivalent Enhancer	Stomach Mucosa	stomach
13	chr15:74164600-74165200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr15:74164600-74165200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:74164600-74167800	Weak transcription	Fetal Intestine Large	intestine

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