Variant report

Variant	rs139354661
Chromosome Location	chr1:10853742-10853743
allele	-/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:10712004..10714801-chr1:10852157..10855382,3	MCF-7	breast:
2	chr1:10750259..10753196-chr1:10853460..10855878,3	MCF-7	breast:
3	chr1:10852601..10855720-chr1:10959417..10961902,3	MCF-7	breast:
4	chr1:10841137..10843114-chr1:10851742..10854578,2	MCF-7	breast:
5	chr1:10842014..10843891-chr1:10851096..10853809,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv29966	chr1:10676800-10874152	Weak transcription Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv870849	chr1:10694125-10894724	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv529981	chr1:10697093-11353487	Weak transcription Enhancers Strong transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
4	nsv832314	chr1:10704811-10859919	Enhancers Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv2757723	chr1:10742502-11055147	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	esv2758921	chr1:10742502-11055147	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv871772	chr1:10832322-10894724	Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv870589	chr1:10840905-10901994	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	esv3353550	chr1:10853540-10857138	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:10850400-10853800	Weak transcription	Gastric	stomach
2	chr1:10851600-10853800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr1:10852800-10853800	Enhancers	Fetal Heart	heart
4	chr1:10853000-10857200	Active TSS	Pancreatic Islets	Pancreatic Islet
5	chr1:10853200-10853800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
6	chr1:10853200-10853800	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
7	chr1:10853200-10853800	Enhancers	Liver	Liver
8	chr1:10853200-10853800	Flanking Active TSS	Fetal Intestine Small	intestine
9	chr1:10853200-10853800	Flanking Active TSS	NHEK	skin
10	chr1:10853200-10854000	Bivalent Enhancer	Brain Cingulate Gyrus	brain
11	chr1:10853200-10854000	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr1:10853200-10854200	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
13	chr1:10853200-10854200	Active TSS	Right Ventricle	heart
14	chr1:10853200-10854200	Active TSS	Stomach Smooth Muscle	stomach
15	chr1:10853200-10854400	Bivalent/Poised TSS	Rectal Smooth Muscle	rectum
16	chr1:10853200-10854400	Active TSS	Skeletal Muscle Female	skeletal muscle
17	chr1:10853200-10856200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
18	chr1:10853200-10856200	Bivalent/Poised TSS	Duodenum Smooth Muscle	Duodenum
19	chr1:10853200-10857000	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
20	chr1:10853200-10857000	Active TSS	Duodenum Mucosa	Duodenum
21	chr1:10853200-10857000	Active TSS	Psoas Muscle	Psoas
22	chr1:10853200-10857200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
23	chr1:10853200-10857200	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:10853400-10853800	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr1:10853400-10853800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:10853400-10853800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr1:10853400-10853800	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr1:10853400-10853800	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr1:10853400-10853800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr1:10853400-10853800	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr1:10853400-10853800	Bivalent/Poised TSS	Adipose Nuclei	Adipose
32	chr1:10853400-10853800	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
33	chr1:10853400-10853800	Bivalent/Poised TSS	Fetal Muscle Trunk	muscle
34	chr1:10853400-10853800	Active TSS	Sigmoid Colon	Sigmoid Colon
35	chr1:10853400-10853800	Enhancers	Spleen	Spleen
36	chr1:10853400-10853800	Flanking Active TSS	Hela-S3	cervix
37	chr1:10853400-10853800	Bivalent Enhancer	HepG2	liver
38	chr1:10853400-10854000	Bivalent/Poised TSS	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr1:10853400-10854000	Bivalent Enhancer	Primary hematopoietic stem cells short term culture	blood
40	chr1:10853400-10854000	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
41	chr1:10853400-10854000	Active TSS	Colonic Mucosa	Colon
42	chr1:10853400-10854000	Bivalent/Poised TSS	Ovary	ovary
43	chr1:10853400-10854000	Bivalent Enhancer	HUVEC	blood vessel
44	chr1:10853400-10854200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr1:10853400-10854200	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
46	chr1:10853400-10854200	Bivalent Enhancer	Placenta	Placenta
47	chr1:10853400-10854400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
48	chr1:10853400-10854400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
49	chr1:10853400-10854400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
50	chr1:10853400-10854400	Active TSS	Fetal Intestine Large	intestine

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