Variant report

Variant	rs139369009
Chromosome Location	chr1:169661452-169661453
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532586	chr1:169593222-169713184	Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv3451367	chr1:169630075-169976964	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv872539	chr1:169658586-169674590	Weak transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1009313	chr1:169661299-169680173	Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169653200-169671600	Weak transcription	Spleen	Spleen
2	chr1:169656800-169662600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
3	chr1:169657000-169661800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr1:169658400-169666200	Enhancers	Thymus	Thymus
5	chr1:169659000-169661600	Genic enhancers	Primary B cells from peripheral blood	blood
6	chr1:169659600-169661800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr1:169660200-169661600	Genic enhancers	Monocytes-CD14+_RO01746	blood
8	chr1:169660400-169661800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr1:169660400-169662800	Genic enhancers	Primary neutrophils fromperipheralblood	blood
10	chr1:169660600-169663600	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr1:169660600-169664000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr1:169660800-169661800	Flanking Active TSS	Dnd41	blood
13	chr1:169660800-169662400	Enhancers	Primary T helper naive cells from peripheral blood	blood
14	chr1:169660800-169663000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:169660800-169664200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr1:169660800-169665200	Genic enhancers	Primary monocytes fromperipheralblood	blood
17	chr1:169661000-169661600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr1:169661200-169661600	Enhancers	Primary T cells fromperipheralblood	blood
19	chr1:169661200-169661600	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr1:169661200-169661600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr1:169661200-169661600	Enhancers	GM12878-XiMat	blood
22	chr1:169661200-169662000	Enhancers	Primary B cells from cord blood	blood
23	chr1:169661200-169662400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
24	chr1:169661200-169663200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr1:169661200-169664000	Enhancers	Fetal Thymus	thymus
26	chr1:169661200-169665400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr1:169661400-169661600	Enhancers	Primary T cells from cord blood	blood
28	chr1:169661400-169661600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr1:169661400-169662000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr1:169661400-169662400	Enhancers	Primary hematopoietic stem cells	blood

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