Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:132135187..132137278-chr6:54698794..54701524,2	MCF-7	breast:
2	chr6:54695865..54698667-chr6:54699652..54702495,2	MCF-7	breast:
3	chr6:54666819..54668967-chr6:54700012..54702691,2	MCF-7	breast:
4	chr6:54699132..54700691-chr6:54704780..54706904,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224984	Chromatin interaction
ENSG00000138246	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10948860	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10948862	0.81[AMR][1000 genomes]
rs12195438	0.81[AMR][1000 genomes]
rs12203709	0.84[AMR][1000 genomes]
rs12207559	0.84[AMR][1000 genomes]
rs12216039	0.84[AMR][1000 genomes]
rs12216049	0.84[AMR][1000 genomes]
rs1393779	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1910357	0.84[AMR][1000 genomes]
rs34713378	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4712075	0.84[AMR][1000 genomes]
rs6459028	0.80[ASN][1000 genomes]
rs6911198	0.91[ASN][1000 genomes]
rs72957572	0.81[AMR][1000 genomes]
rs7751955	0.83[ASN][1000 genomes]
rs7772048	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9296769	0.84[AMR][1000 genomes]
rs9464148	0.84[AMR][1000 genomes]
rs9475029	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9475032	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9475038	0.84[AMR][1000 genomes]
rs9475039	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54700400-54701600	Weak transcription	HMEC	breast

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