Variant report

Variant	rs139382856
Chromosome Location	chr13:30622093-30622094
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30593860..30596414-chr13:30619534..30622191,2	MCF-7	breast:
2	chr13:30617504..30619162-chr13:30621081..30623948,2	MCF-7	breast:
3	chr13:30621873..30623731-chr13:30625663..30627345,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3520592	chr13:30243601-30648554	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv3520593	chr13:30243601-30648554	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1040215	chr13:30621351-30741022	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv541745	chr13:30621351-30741022	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30612000-30625600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr13:30614800-30625800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr13:30619400-30625600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr13:30619800-30622200	Enhancers	HSMM	muscle
5	chr13:30619800-30622400	Enhancers	HSMMtube	muscle
6	chr13:30619800-30622400	Enhancers	Osteobl	bone
7	chr13:30620000-30622200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr13:30620000-30622200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr13:30620000-30622400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:30620200-30626600	Weak transcription	Stomach Mucosa	stomach
11	chr13:30620600-30623600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr13:30620800-30622200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr13:30620800-30623800	Weak transcription	NHEK	skin
14	chr13:30620800-30625800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr13:30621000-30622400	Enhancers	Primary T cells from cord blood	blood
16	chr13:30621000-30622400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:30621000-30623600	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr13:30621200-30622200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr13:30621200-30622400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
20	chr13:30621200-30622400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
21	chr13:30621200-30622600	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr13:30621200-30623800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr13:30621400-30622200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr13:30621400-30622200	Enhancers	Fetal Intestine Small	intestine
25	chr13:30621400-30622200	Enhancers	Dnd41	blood
26	chr13:30621400-30622400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr13:30621400-30622400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr13:30621600-30622200	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr13:30621600-30622400	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr13:30621600-30622400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr13:30621600-30622400	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr13:30621600-30622400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr13:30621600-30622400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr13:30621600-30622400	Enhancers	Small Intestine	intestine
35	chr13:30621600-30624000	Weak transcription	NH-A	brain
36	chr13:30621800-30622200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr13:30621800-30622200	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr13:30621800-30622400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr13:30622000-30623000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr13:30622000-30625800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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