Variant report

Variant	rs139400564
Chromosome Location	chr14:105772468-105772469
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:105765347..105769450-chr14:105769470..105773842,3	K562	blood:
2	chr14:105770409..105772942-chr14:105807785..105809717,2	MCF-7	breast:
3	chr14:105765347..105769263-chr14:105769470..105773685,4	K562	blood:
4	chr14:105772029..105773588-chr14:105805773..105807669,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179364	Chromatin interaction
ENSG00000185024	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:21 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1828345	chr14:105100787-105803170	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
2	nsv542225	chr14:105133688-105803170	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	165 gene(s)	inside rSNPs	diseases
3	nsv542227	chr14:105157572-105803170	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	147 gene(s)	inside rSNPs	diseases
4	nsv917106	chr14:105339195-105803170	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	94 gene(s)	inside rSNPs	diseases
5	nsv902422	chr14:105420215-105803170	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
6	nsv902423	chr14:105430890-105803170	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
7	nsv902424	chr14:105436222-105803170	Genic enhancers Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
8	esv2758369	chr14:105513346-105803170	Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	esv2760014	chr14:105513346-105803170	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
10	nsv902441	chr14:105602619-105803170	Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv902442	chr14:105602619-105803170	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	esv1817919	chr14:105605199-105803170	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
14	nsv566186	chr14:105675701-105779305	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
15	nsv902466	chr14:105704465-105803170	Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
16	esv29986	chr14:105707292-105803170	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
17	nsv832887	chr14:105717339-105803170	Strong transcription Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
18	nsv832888	chr14:105717339-105803170	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
19	nsv1052355	chr14:105718240-105789157	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
20	nsv566187	chr14:105756485-105780704	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
21	nsv566188	chr14:105771428-105780920	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:105768200-105775200	Weak transcription	HMEC	breast
2	chr14:105768200-105775400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr14:105768200-105775600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr14:105768200-105775600	Weak transcription	NHEK	skin
5	chr14:105768200-105777600	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:105768200-105778000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr14:105768200-105778000	Weak transcription	Brain Anterior Caudate	brain
8	chr14:105768200-105778000	Weak transcription	Brain Substantia Nigra	brain
9	chr14:105768200-105778000	Weak transcription	Fetal Stomach	stomach
10	chr14:105768200-105778000	Weak transcription	Right Ventricle	heart
11	chr14:105768200-105778000	Weak transcription	Stomach Smooth Muscle	stomach
12	chr14:105768200-105778800	Weak transcription	Fetal Lung	lung
13	chr14:105768200-105779400	Weak transcription	Colonic Mucosa	Colon
14	chr14:105768200-105779400	Weak transcription	Thymus	Thymus
15	chr14:105768200-105779600	Weak transcription	GM12878-XiMat	blood
16	chr14:105768200-105779800	Weak transcription	NHLF	lung
17	chr14:105768200-105780000	Weak transcription	NHDF-Ad	bronchial
18	chr14:105768200-105780200	Weak transcription	Gastric	stomach
19	chr14:105768200-105780200	Weak transcription	Right Atrium	heart
20	chr14:105768400-105773400	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr14:105768400-105777600	Weak transcription	Brain Hippocampus Middle	brain
22	chr14:105768400-105777800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr14:105768400-105778000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr14:105768400-105779200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr14:105768400-105779400	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:105768400-105779800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr14:105768400-105779800	Weak transcription	Lung	lung
28	chr14:105768400-105780200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:105770600-105775800	Weak transcription	Pancreas	Pancrea
30	chr14:105770800-105779600	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr14:105771200-105772600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
32	chr14:105771200-105772600	Enhancers	Fetal Thymus	thymus
33	chr14:105771400-105772600	Enhancers	Primary B cells from cord blood	blood
34	chr14:105771400-105772600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr14:105771400-105780200	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr14:105771600-105772600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr14:105771600-105780000	Weak transcription	K562	blood
38	chr14:105771800-105772600	Enhancers	Fetal Intestine Large	intestine
39	chr14:105771800-105772600	Enhancers	Fetal Intestine Small	intestine
40	chr14:105772000-105772600	Enhancers	Fetal Muscle Leg	muscle
41	chr14:105772000-105774200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr14:105772200-105773600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:105772200-105774200	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr14:105772200-105778200	Weak transcription	Fetal Muscle Trunk	muscle
45	chr14:105772200-105779800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr14:105772200-105780000	Weak transcription	Primary T cells from cord blood	blood
47	chr14:105772400-105772800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr14:105772400-105773000	Weak transcription	HUES6 Cell Line	embryonic stem cell
49	chr14:105772400-105778200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr14:105772400-105779400	Weak transcription	Spleen	Spleen

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