Variant report

Variant	rs139420896
Chromosome Location	chr16:46419732-46419733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:46419232..46419882-chr2:89838516..89839016,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351345	chr16:46385802-46460549	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3415772	chr16:46385802-46461249	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv3348821	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3362417	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3418529	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	esv3433355	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv482466	chr16:46385802-46508907	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv572449	chr16:46385922-46443964	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv572450	chr16:46385922-46450037	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	nsv572451	chr16:46385922-46452565	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
11	nsv572452	chr16:46385922-46498901	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv572453	chr16:46385922-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	nsv572454	chr16:46385922-46499821	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
14	nsv572455	chr16:46385922-46500009	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
15	nsv572456	chr16:46385922-46500195	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
16	nsv572457	chr16:46385922-46500302	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
17	nsv572458	chr16:46385922-46500451	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
18	nsv433447	chr16:46386457-46479625	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
19	nsv572459	chr16:46386457-46539392	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
20	esv1799780	chr16:46386457-46875496	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv4026	chr16:46397519-46430215	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv4857	chr16:46400687-46427079	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv1813432	chr16:46402997-46499280	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
24	esv1809860	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
25	esv1847123	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
26	esv1850910	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
27	esv1847006	chr16:46402997-46500451	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
28	esv4493	chr16:46403575-46434938	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv995719	chr16:46409302-46454077	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
30	esv12819	chr16:46409917-46456838	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
31	esv8943	chr16:46416819-46427174	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv3314049	chr16:46416861-46426352	ZNF genes & repeats Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv3314050	chr16:46416861-46426352	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv3397947	chr16:46416868-46426362	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv8116	chr16:46417038-46441408	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
36	esv3437923	chr16:46417210-46427548	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
37	esv3443985	chr16:46417211-46427028	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv3421458	chr16:46417216-46450222	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
39	esv3517187	chr16:46417630-46427119	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
40	esv3517188	chr16:46417630-46427119	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv3353626	chr16:46419355-46420317	ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv8626	chr16:46419468-46431824	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv3333678	chr16:46419666-46419944	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46404800-46421600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
2	chr16:46404800-46430400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
3	chr16:46415200-46421600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:46415200-46430400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
5	chr16:46416800-46420000	ZNF genes & repeats	Left Ventricle	heart
6	chr16:46416800-46420200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr16:46416800-46420200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
8	chr16:46416800-46420400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
9	chr16:46416800-46420400	ZNF genes & repeats	Colon Smooth Muscle	Colon
10	chr16:46416800-46420600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
11	chr16:46416800-46420600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr16:46416800-46420800	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
13	chr16:46416800-46421400	ZNF genes & repeats	Gastric	stomach
14	chr16:46416800-46421600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr16:46416800-46421600	ZNF genes & repeats	Liver	Liver
16	chr16:46416800-46421600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr16:46416800-46421600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
18	chr16:46416800-46421600	ZNF genes & repeats	Fetal Brain Male	brain
19	chr16:46416800-46421600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
20	chr16:46416800-46421800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr16:46416800-46430400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
22	chr16:46416800-46430400	ZNF genes & repeats	Adipose Nuclei	Adipose
23	chr16:46419400-46419800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr16:46419400-46419800	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
25	chr16:46419400-46419800	ZNF genes & repeats	Lung	lung
26	chr16:46419400-46419800	ZNF genes & repeats	HSMM	muscle
27	chr16:46419400-46420000	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr16:46419400-46420000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr16:46419400-46420000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr16:46419400-46420000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr16:46419400-46420000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr16:46419400-46420000	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr16:46419400-46420000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
34	chr16:46419400-46420000	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
35	chr16:46419400-46420000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr16:46419400-46420000	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr16:46419400-46420000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
38	chr16:46419400-46420000	ZNF genes & repeats	Brain Cingulate Gyrus	brain
39	chr16:46419400-46420000	ZNF genes & repeats	Fetal Muscle Leg	muscle
40	chr16:46419400-46420000	ZNF genes & repeats	Placenta	Placenta
41	chr16:46419400-46420000	ZNF genes & repeats	Fetal Stomach	stomach
42	chr16:46419400-46420000	ZNF genes & repeats	Ovary	ovary
43	chr16:46419400-46420000	ZNF genes & repeats	Pancreas	Pancrea
44	chr16:46419400-46420000	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
45	chr16:46419400-46420000	ZNF genes & repeats	Right Atrium	heart
46	chr16:46419400-46420000	ZNF genes & repeats	Right Ventricle	heart
47	chr16:46419400-46420000	ZNF genes & repeats	Spleen	Spleen
48	chr16:46419400-46420000	ZNF genes & repeats	GM12878-XiMat	blood
49	chr16:46419400-46420000	ZNF genes & repeats	Hela-S3	cervix
50	chr16:46419400-46420000	ZNF genes & repeats	K562	blood

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