Variant report

Variant	rs139439083
Chromosome Location	chr7:108204676-108204677
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:108202468..108204754-chr7:108208486..108210281,2	MCF-7	breast:
2	chr7:108191362..108206184-chr7:108206645..108216261,27	K562	blood:
3	chr7:108159403..108171484-chr7:108200740..108214365,45	K562	blood:

Variant related genes	Relation type
ENSG00000177683	Chromatin interaction
ENSG00000128590	Chromatin interaction
ENSG00000135241	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3348839	chr7:107377311-108286538	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
2	nsv817371	chr7:108199882-108649799	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
3	nsv970570	chr7:108204432-108205276	Weak transcription Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:108195600-108208400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr7:108197600-108208600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:108197800-108208600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:108198000-108208400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:108198400-108207800	Weak transcription	Brain Hippocampus Middle	brain
6	chr7:108198400-108208400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr7:108198600-108204800	Weak transcription	Dnd41	blood
8	chr7:108198600-108207400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:108198600-108208600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr7:108198600-108208600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:108198600-108208600	Weak transcription	Fetal Brain Male	brain
12	chr7:108198600-108208600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr7:108198600-108208600	Weak transcription	Thymus	Thymus
14	chr7:108198800-108205800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr7:108198800-108206000	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr7:108199000-108207600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr7:108199400-108207400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr7:108199400-108208200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr7:108199800-108204800	Weak transcription	Adipose Nuclei	Adipose
20	chr7:108199800-108204800	Weak transcription	GM12878-XiMat	blood
21	chr7:108200000-108207000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr7:108200000-108207800	Weak transcription	HepG2	liver
23	chr7:108200200-108206000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr7:108200200-108208000	Weak transcription	Brain Angular Gyrus	brain
25	chr7:108200400-108209400	Weak transcription	Spleen	Spleen
26	chr7:108200600-108208400	Weak transcription	NHLF	lung
27	chr7:108201200-108208600	Weak transcription	Pancreas	Pancrea
28	chr7:108201600-108204800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr7:108201600-108207200	Weak transcription	HUVEC	blood vessel
30	chr7:108201600-108208600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:108201600-108208600	Weak transcription	Left Ventricle	heart
32	chr7:108201600-108208600	Weak transcription	Right Ventricle	heart
33	chr7:108201800-108207400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr7:108201800-108208400	Weak transcription	Brain Germinal Matrix	brain
35	chr7:108202000-108207000	Strong transcription	Primary B cells from cord blood	blood
36	chr7:108202000-108207600	Weak transcription	Hela-S3	cervix
37	chr7:108202000-108207800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr7:108202000-108208400	Weak transcription	Fetal Intestine Small	intestine
39	chr7:108202200-108205200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr7:108202200-108205200	Weak transcription	Osteobl	bone
41	chr7:108202200-108206200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:108202200-108207200	Weak transcription	Fetal Heart	heart
43	chr7:108202200-108207600	Strong transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:108202200-108208600	Weak transcription	Fetal Stomach	stomach
45	chr7:108202200-108209200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:108202400-108204800	Weak transcription	Fetal Intestine Large	intestine
47	chr7:108202400-108205200	Weak transcription	HMEC	breast
48	chr7:108202400-108206600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr7:108202400-108208000	Weak transcription	Fetal Brain Female	brain
50	chr7:108202400-108208400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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