The 2.0 version of rSNPBase

Variant report

Variant rs139452530
Chromosome Location chr6:143606767-143606768
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:41 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:143570800-143609200 Weak transcription Fetal Intestine Large intestine
2 chr6:143583800-143615400 Weak transcription K562 blood
3 chr6:143589000-143607400 Weak transcription Aorta Aorta
4 chr6:143593200-143606800 Weak transcription NHEK skin
5 chr6:143593400-143607000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
6 chr6:143598600-143620200 Weak transcription Brain Angular Gyrus brain
7 chr6:143600600-143609200 Weak transcription Brain Anterior Caudate brain
8 chr6:143603000-143611000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
9 chr6:143603200-143607000 Weak transcription Fetal Heart heart
10 chr6:143603200-143609600 Weak transcription Brain Cingulate Gyrus brain
11 chr6:143603200-143616800 Weak transcription Brain Inferior Temporal Lobe brain
12 chr6:143603200-143622200 Weak transcription Brain Hippocampus Middle brain
13 chr6:143604600-143607800 Weak transcription Lung lung
14 chr6:143604800-143608000 Weak transcription Esophagus oesophagus
15 chr6:143604800-143608200 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
16 chr6:143604800-143609200 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr6:143605000-143608400 Enhancers Osteobl bone
18 chr6:143605200-143608600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
19 chr6:143605200-143608800 Enhancers Fetal Stomach stomach
20 chr6:143605200-143610400 Strong transcription Liver Liver
21 chr6:143605400-143606800 Enhancers Fetal Muscle Leg muscle
22 chr6:143605400-143607600 Enhancers Stomach Smooth Muscle stomach
23 chr6:143605400-143614600 Weak transcription NHDF-Ad bronchial
24 chr6:143605600-143608800 Enhancers HMEC breast
25 chr6:143605600-143622000 Weak transcription HepG2 liver
26 chr6:143605800-143607000 Weak transcription NH-A brain
27 chr6:143605800-143607400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
28 chr6:143605800-143609400 Enhancers Breast Myoepithelial Primary Cells Breast
29 chr6:143606000-143606800 Strong transcription Fetal Intestine Small intestine
30 chr6:143606200-143609400 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr6:143606400-143606800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
32 chr6:143606400-143607000 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr6:143606400-143607400 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
34 chr6:143606400-143607400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
35 chr6:143606400-143607400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
36 chr6:143606400-143607400 Weak transcription Ovary ovary
37 chr6:143606400-143608400 Enhancers Right Atrium heart
38 chr6:143606600-143607800 Weak transcription Rectal Smooth Muscle rectum
39 chr6:143606600-143608000 Weak transcription Colon Smooth Muscle Colon
40 chr6:143606600-143609200 Weak transcription H1 Cell Line embryonic stem cell
41 chr6:143606600-143609200 Weak transcription HUES6 Cell Line embryonic stem cell

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Last update: Aug 31, 2015