Variant report

Variant	rs139453508
Chromosome Location	chr11:64110689-64110690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:61)
Chromatin interactive
region (count:20)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BHLHE40	chr11:64110643-64110839	K562	blood:	n/a	n/a
2	E2F6	chr11:64110661-64110789	K562	blood:	n/a	n/a
3	MAZ	chr11:64109230-64111125	IMR90	lung:	n/a	chr11:64110190-64110200
4	ZBTB7A	chr11:64110555-64110774	K562	blood:	n/a	n/a
5	YY1	chr11:64110637-64110893	K562	blood:	n/a	n/a
6	HMGN3	chr11:64110609-64110874	K562	blood:	n/a	n/a
7	POLR2A	chr11:64110468-64110866	K562	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:64110657-64110707	GM12891	blood:	n/a
2	chr11:64110657-64110707	H1-hESC	embryonic stem cell:	embryo
3	chr11:64110657-64110707	AG09319	gingival:	n/a
4	chr11:64110657-64110707	SKMC	muscle:	n/a
5	chr11:64110657-64110707	SAEC	small airway:	n/a
6	chr11:64110657-64110707	CMK	blood:	n/a
7	chr11:64110657-64110707	SK-N-SH	brain:	n/a
8	chr11:64110657-64110707	ovcar-3	ovarian:	n/a
9	chr11:64110657-64110707	HEK293	kidney:	embryo
10	chr11:64110657-64110707	RPTEC	kidney:	n/a
11	chr11:64110657-64110707	GM19239	blood:	n/a
12	chr11:64110657-64110707	HIPEpiC	eye:	n/a
13	chr11:64110657-64110707	NB4	blood:	n/a
14	chr11:64110657-64110707	AG04449	skin:	fetal
15	chr11:64110657-64110707	HRCEpiC	kidney:	n/a
16	chr11:64110657-64110707	HCPEpiC	choroid plexus:	n/a
17	chr11:64110657-64110707	AG09309	skin:	n/a
18	chr11:64110657-64110707	NHBE	bronchial:	n/a
19	chr11:64110657-64110707	AoSMC	blood vessel:	n/a
20	chr11:64110657-64110707	HNPCEpiC	eye:	n/a
21	chr11:64110657-64110707	Hepatocyte	liver:	n/a
22	chr11:64110657-64110707	K562	blood:	n/a
23	chr11:64110657-64110707	A549	lung:	n/a
24	chr11:64110657-64110707	BJ	skin:	n/a
25	chr11:64110657-64110707	U87	brain:	n/a
26	chr11:64110657-64110707	PANC-1	pancreas:	n/a
27	chr11:64110657-64110707	HL-60	blood:	n/a
28	chr11:64110657-64110707	HCM	heart:	n/a
29	chr11:64110657-64110707	PFSK-1	brain:	n/a
30	chr11:64110657-64110707	HAEpiC	amniotic membrane:	n/a
31	chr11:64110657-64110707	T-47D	breast:	n/a
32	chr11:64110657-64110707	HPAEpiC	pulmonary alveolar:	n/a
33	chr11:64110657-64110707	GM06990	blood:	n/a
34	chr11:64110657-64110707	IMR90	lung:	fetal
35	chr11:64110657-64110707	NT2-D1	testis:	n/a
36	chr11:64110657-64110707	GM12892	blood:	n/a
37	chr11:64110657-64110707	HRE	kidney:	n/a
38	chr11:64110657-64110707	AG10803	skin:	n/a
39	chr11:64110657-64110707	GM12878	blood:	n/a
40	chr11:64110657-64110707	NH-A	brain:	n/a
41	chr11:64110657-64110707	SK-N-SH_RA	brain:	n/a
42	chr11:64110657-64110707	HMEC	breast:	n/a
43	chr11:64110657-64110707	HCF	heart:	n/a
44	chr11:64110657-64110707	HRPEpiC	eye:	n/a
45	chr11:64110657-64110707	SK-N-MC	brain:	n/a
46	chr11:64110657-64110707	Hela-S3	cervix:	n/a
47	chr11:64110657-64110707	HEEpiC	esophagus:	n/a
48	chr11:64110657-64110707	BE2_C	brain:	n/a
49	chr11:64110657-64110707	HepG2	liver:	n/a
50	chr11:64110657-64110707	PrEC	prostate:	n/a

(count:20 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:64109881..64111855-chr11:64133926..64136409,2	K562	blood:
2	chr11:64001193..64003368-chr11:64108712..64111498,2	MCF-7	breast:
3	chr11:64008607..64011562-chr11:64108610..64113296,4	MCF-7	breast:
4	chr10:74450774..74453542-chr11:64109200..64111337,2	MCF-7	breast:
5	chr11:64078839..64083408-chr11:64108257..64111409,4	MCF-7	breast:
6	chr11:64012324..64016807-chr11:64110478..64112580,4	MCF-7	breast:
7	chr11:64083618..64086276-chr11:64108878..64111761,4	K562	blood:
8	chr11:64109881..64112376-chr11:64133926..64136409,3	K562	blood:
9	chr11:64072715..64075742-chr11:64108562..64111155,5	MCF-7	breast:
10	chr11:64035871..64037932-chr11:64108620..64111379,2	K562	blood:
11	chr11:63932620..63934152-chr11:64110470..64112736,2	MCF-7	breast:
12	chr11:63972230..63976425-chr11:64106710..64112651,7	K562	blood:
13	chr11:64036423..64038929-chr11:64108620..64112959,5	K562	blood:
14	chr11:64109688..64110714-chr11:64122196..64123136,4	MCF-7	breast:
15	chr11:64110456..64113002-chr11:64125236..64127679,2	MCF-7	breast:
16	chr11:64109106..64114264-chr11:64115033..64120054,6	MCF-7	breast:
17	chr11:64070411..64072227-chr11:64108642..64111595,2	MCF-7	breast:
18	chr11:64068655..64075946-chr11:64105786..64111623,11	K562	blood:
19	chr11:64085064..64087232-chr11:64106469..64111767,5	MCF-7	breast:
20	chr11:64108620..64111741-chr11:64119418..64122798,4	MCF-7	breast:

No data

Variant related genes	Relation type
CCDC88B	TF binding region
CCDC88B	CpG island
ENSG00000168071	Chromatin interaction
ENSG00000173511	Chromatin interaction
ENSG00000173486	Chromatin interaction
ENSG00000173153	Chromatin interaction
ENSG00000173264	Chromatin interaction
ENSG00000133315	Chromatin interaction
ENSG00000256116	Chromatin interaction
ENSG00000221273	Chromatin interaction
ENSG00000173113	Chromatin interaction
ENSG00000219435	Chromatin interaction
ENSG00000256940	Chromatin interaction
ENSG00000126432	Chromatin interaction
ENSG00000149781	Chromatin interaction
ENSG00000156026	Chromatin interaction
ENSG00000162302	Chromatin interaction
ENSG00000173457	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897631	chr11:63664882-64129722	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	254 gene(s)	inside rSNPs	diseases
2	esv1802079	chr11:63746066-64151373	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	247 gene(s)	inside rSNPs	diseases
3	nsv897646	chr11:63754986-64150370	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	245 gene(s)	inside rSNPs	diseases
4	nsv1035875	chr11:63800238-64132030	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	234 gene(s)	inside rSNPs	diseases
5	nsv897660	chr11:63860826-64125142	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	231 gene(s)	inside rSNPs	diseases
6	nsv897661	chr11:63863405-64129722	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	233 gene(s)	inside rSNPs	diseases
7	nsv897662	chr11:63889749-64150370	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
8	nsv897664	chr11:63919742-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	237 gene(s)	inside rSNPs	diseases
9	nsv869944	chr11:63932152-64123062	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	227 gene(s)	inside rSNPs	diseases
10	nsv897671	chr11:63964657-64150370	Active TSS Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	179 gene(s)	inside rSNPs	diseases
11	nsv832186	chr11:63972260-64170059	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	180 gene(s)	inside rSNPs	diseases
12	esv1802320	chr11:63987425-64154633	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	178 gene(s)	inside rSNPs	diseases
13	nsv897679	chr11:63994692-64150370	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
14	nsv897682	chr11:63999529-64170500	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	164 gene(s)	inside rSNPs	diseases
15	nsv1043277	chr11:64002997-64132030	Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	157 gene(s)	inside rSNPs	diseases
16	nsv897685	chr11:64048912-64150370	Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
17	nsv555192	chr11:64097233-64111928	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	n/a
18	nsv818840	chr11:64097233-64125142	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
19	nsv818841	chr11:64097233-64129722	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
20	nsv555193	chr11:64107143-64120574	Flanking Active TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	22 gene(s)	inside rSNPs	diseases
21	nsv897688	chr11:64107735-64150370	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
22	esv3371829	chr11:64108901-64111749	Genic enhancers Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	19 gene(s)	inside rSNPs	n/a
23	nsv897689	chr11:64109118-64148420	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
24	esv3322945	chr11:64110026-64111024	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:64108000-64110800	Enhancers	Lung	lung
2	chr11:64108200-64111200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr11:64108200-64111800	Enhancers	Placenta	Placenta
4	chr11:64108600-64110800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr11:64108600-64110800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:64108600-64111000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr11:64108800-64111000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr11:64108800-64111600	Genic enhancers	Primary B cells from peripheral blood	blood
9	chr11:64108800-64111600	Genic enhancers	Spleen	Spleen
10	chr11:64109000-64110800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:64109000-64110800	Transcr. at gene 5' and 3'	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr11:64109600-64110800	Bivalent Enhancer	Fetal Brain Male	brain
13	chr11:64109600-64111000	Enhancers	Liver	Liver
14	chr11:64109600-64111400	Enhancers	Gastric	stomach
15	chr11:64109800-64111000	Active TSS	iPS-15b Cell Line	embryonic stem cell
16	chr11:64110000-64110800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:64110000-64110800	Weak transcription	Primary T cells from cord blood	blood
18	chr11:64110000-64110800	Weak transcription	Brain Angular Gyrus	brain
19	chr11:64110000-64111000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr11:64110000-64111000	Enhancers	Rectal Mucosa Donor 29	rectum
21	chr11:64110000-64111200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr11:64110000-64111200	Enhancers	Fetal Stomach	stomach
23	chr11:64110000-64111400	Enhancers	Breast Myoepithelial Primary Cells	Breast
24	chr11:64110000-64111400	Enhancers	Stomach Mucosa	stomach
25	chr11:64110000-64111600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr11:64110000-64111600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr11:64110000-64111600	Genic enhancers	GM12878-XiMat	blood
28	chr11:64110000-64111600	Enhancers	K562	blood
29	chr11:64110000-64112200	Enhancers	Fetal Intestine Large	intestine
30	chr11:64110000-64113200	Genic enhancers	Primary T cells fromperipheralblood	blood
31	chr11:64110000-64114600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr11:64110000-64115800	Weak transcription	HSMM	muscle
33	chr11:64110000-64122400	Weak transcription	Primary hematopoietic stem cells	blood
34	chr11:64110200-64110800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
35	chr11:64110200-64110800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr11:64110200-64110800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr11:64110200-64110800	Weak transcription	Fetal Heart	heart
38	chr11:64110200-64110800	Enhancers	Sigmoid Colon	Sigmoid Colon
39	chr11:64110200-64111000	Weak transcription	Primary B cells from cord blood	blood
40	chr11:64110200-64111000	Enhancers	Pancreas	Pancrea
41	chr11:64110200-64111000	Enhancers	HMEC	breast
42	chr11:64110200-64111200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:64110200-64111600	Enhancers	Esophagus	oesophagus
44	chr11:64110200-64112800	Enhancers	Fetal Muscle Leg	muscle
45	chr11:64110200-64113400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
46	chr11:64110200-64117800	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr11:64110200-64125000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr11:64110200-64125200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr11:64110400-64110800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr11:64110400-64110800	Enhancers	iPS-20b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links