Variant report

Variant	rs1394858
Chromosome Location	chr4:172989546-172989547
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:172988137..172989930-chr4:172993221..172995055,2	K562	blood:

Extended variants
information (count: 105 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1039626	0.85[CHB][hapmap]
rs13113560	0.91[ASN][1000 genomes]
rs13133832	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs13139421	0.85[CHB][hapmap]
rs34453635	0.91[ASN][1000 genomes]
rs34926166	0.90[ASN][1000 genomes]
rs35340713	0.98[ASN][1000 genomes]
rs36118150	1.00[ASN][1000 genomes]
rs4277744	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4557229	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs62331075	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:94 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022527	chr4:172547732-173236939	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv537357	chr4:172547732-173236939	Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1024693	chr4:172609237-173236939	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv498033	chr4:172830955-173121438	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv830152	chr4:172906364-173087067	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	nsv596198	chr4:172914759-173035260	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
7	nsv596199	chr4:172922257-173035260	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv596200	chr4:172932137-173035260	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	nsv881219	chr4:172946287-173024088	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
10	nsv4605	chr4:172965232-173013447	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
11	nsv437950	chr4:172973580-172990972	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
12	esv1805137	chr4:172981543-172992435	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
13	esv1799581	chr4:172981543-172992876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv508332	chr4:172985686-173001771	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv1799974	chr4:172985760-172992876	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv819440	chr4:172986626-172993430	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
17	esv3464622	chr4:172986677-172994875	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
18	esv2607011	chr4:172987211-172993505	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
19	nsv1019420	chr4:172987381-173002876	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
20	esv3489515	chr4:172987477-172994025	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
21	esv3489521	chr4:172987534-172993675	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
22	esv2421911	chr4:172987736-172993181	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
23	nsv964345	chr4:172987752-172994798	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv3489520	chr4:172987780-172993101	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv2763839	chr4:172987827-172996893	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
26	nsv10611	chr4:172987853-172993423	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
27	esv3464625	chr4:172987902-172994250	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
28	esv3489514	chr4:172987927-172993950	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
29	esv1011260	chr4:172988104-172992987	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
30	nsv436418	chr4:172988137-172993369	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv2565726	chr4:172988187-172993720	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
32	esv3464621	chr4:172988228-172993225	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
33	esv8153	chr4:172988364-172993092	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
34	esv2033228	chr4:172988466-172993115	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
35	esv3464624	chr4:172988507-172993008	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
36	esv3489518	chr4:172988535-172993037	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
37	esv3489517	chr4:172988537-172993044	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
38	esv3489516	chr4:172988553-172992968	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
39	esv3464617	chr4:172988562-172992999	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
40	nsv513180	chr4:172988565-172992953	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
41	esv3464623	chr4:172988573-172992958	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
42	esv3489513	chr4:172988581-172992980	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
43	esv3464618	chr4:172988595-172992994	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
44	nsv499494	chr4:172988639-172992932	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
45	nsv289632	chr4:172988640-172992930	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
46	esv3464626	chr4:172988640-172992932	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
47	esv3489522	chr4:172988640-172992932	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
48	esv17543	chr4:172988680-172992916	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
49	esv1810165	chr4:172988860-172991154	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
50	esv1812052	chr4:172988860-172991274	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:172989000-172990400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr4:172989200-172989600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:172989400-172990400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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