The 2.0 version of rSNPBase
Home
Search
Document
What's New
Tutorial
Data Content
Download
Feedback
About Us
Variant report
Variant
rs139504984
Chromosome Location
chr2:190787646-190787647
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:12)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:12 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
POLR2A
chr2:190787631-190788256
GM12892
blood:
n/a
n/a
2
POLR2A
chr2:190787641-190788288
HepG2
liver:
n/a
n/a
3
POLR2A
chr2:190787631-190788024
H1-hESC
embryonic stem cell:
n/a
n/a
4
POLR2A
chr2:190787635-190788259
GM12878
blood:
n/a
n/a
5
POLR2A
chr2:190787606-190788024
MCF-7
breast:
n/a
n/a
6
POLR2A
chr2:190787614-190788025
MCF-7
breast:
n/a
n/a
7
TBP
chr2:190787451-190787737
K562
blood:
n/a
n/a
8
POLR2A
chr2:190787631-190788004
ProgFib
skin:
n/a
n/a
9
POLR2A
chr2:190787609-190788382
GM12892
blood:
n/a
n/a
10
POLR2A
chr2:190787645-190787666
Gliobla
brain:
n/a
n/a
11
POLR2A
chr2:190787626-190788198
K562
blood:
n/a
n/a
12
POLR2A
chr2:190787597-190788024
MCF-7
breast:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
HNRNPCP2
TF binding region
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv961542
chr2:190780134-190789823
Inactive region
TF binding regionCpG islandChromatin interactive regionlncRNA
4 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links