Variant report

Variant	rs139525091
Chromosome Location	chr15:72351588-72351589
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv984089	chr15:72350806-72352174	Weak transcription Enhancers Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72301000-72361200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr15:72333200-72353800	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr15:72334000-72355000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr15:72338800-72352800	Weak transcription	Left Ventricle	heart
5	chr15:72338800-72353000	Weak transcription	Placenta	Placenta
6	chr15:72339000-72352800	Weak transcription	Ovary	ovary
7	chr15:72339000-72353000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:72339000-72353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr15:72339000-72363400	Weak transcription	Primary B cells from cord blood	blood
10	chr15:72342000-72352800	Weak transcription	Right Atrium	heart
11	chr15:72342800-72352800	Weak transcription	Thymus	Thymus
12	chr15:72343800-72353200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:72344000-72355200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:72344400-72353000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr15:72344400-72353600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:72344800-72353200	Weak transcription	Lung	lung
17	chr15:72345000-72352800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr15:72345200-72352800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr15:72345200-72352800	Weak transcription	Fetal Muscle Leg	muscle
20	chr15:72345200-72353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr15:72345200-72353000	Weak transcription	Esophagus	oesophagus
22	chr15:72345200-72353000	Weak transcription	Fetal Stomach	stomach
23	chr15:72345400-72353200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr15:72349400-72351800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr15:72349600-72356400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:72349800-72351600	Enhancers	Fetal Intestine Small	intestine
27	chr15:72350200-72351600	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr15:72350200-72351600	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr15:72350200-72352800	Weak transcription	HSMMtube	muscle
30	chr15:72350200-72353000	Weak transcription	Right Ventricle	heart
31	chr15:72350200-72353200	Weak transcription	Stomach Mucosa	stomach
32	chr15:72350200-72355400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr15:72350400-72352800	Weak transcription	Liver	Liver
34	chr15:72350400-72352800	Weak transcription	Psoas Muscle	Psoas
35	chr15:72350400-72352800	Weak transcription	Skeletal Muscle Female	skeletal muscle
36	chr15:72350400-72353000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr15:72350400-72353000	Weak transcription	Colon Smooth Muscle	Colon
38	chr15:72350400-72353000	Weak transcription	Fetal Heart	heart
39	chr15:72350400-72353000	Weak transcription	HSMM	muscle
40	chr15:72350400-72353200	Weak transcription	Adipose Nuclei	Adipose
41	chr15:72350400-72353200	Weak transcription	Fetal Kidney	kidney
42	chr15:72350400-72353400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr15:72350400-72353400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:72350400-72353600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr15:72350400-72354000	Weak transcription	Hela-S3	cervix
46	chr15:72350400-72354800	Weak transcription	Brain Anterior Caudate	brain
47	chr15:72350400-72355600	Weak transcription	HMEC	breast
48	chr15:72350600-72352200	Enhancers	HUES48 Cell Line	embryonic stem cell
49	chr15:72350600-72352800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr15:72350600-72353200	Weak transcription	Primary T cells from cord blood	blood

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