Variant report

Variant	rs139543506
Chromosome Location	chr1:94505059-94505060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94504965..94505747-chr1:94801282..94802123,3	MCF-7	breast:
2	chr1:94504792..94505809-chr1:94801226..94802348,4	MCF-7	breast:
3	chr1:94502816..94505360-chr1:94694750..94697690,2	MCF-7	breast:
4	chr1:94505022..94505841-chr1:94801175..94801955,3	K562	blood:
5	chr1:94502330..94505107-chr1:94527585..94529424,2	MCF-7	breast:
6	chr1:94373717..94376146-chr1:94504477..94506025,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000023909	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871172	chr1:94504545-94535546	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94492200-94510000	Weak transcription	Aorta	Aorta
2	chr1:94496800-94508400	Weak transcription	Gastric	stomach
3	chr1:94497600-94505200	Weak transcription	Lung	lung
4	chr1:94501200-94506000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr1:94501400-94505200	Enhancers	Hela-S3	cervix
6	chr1:94501800-94510000	Weak transcription	Pancreas	Pancrea
7	chr1:94502000-94505800	Enhancers	Osteobl	bone
8	chr1:94502000-94506000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr1:94502000-94506800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr1:94502600-94505200	Enhancers	HSMMtube	muscle
11	chr1:94502600-94505600	Enhancers	HMEC	breast
12	chr1:94502600-94505800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr1:94502800-94507000	Enhancers	Fetal Muscle Leg	muscle
14	chr1:94503200-94506400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:94503600-94505200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr1:94503800-94505200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr1:94503800-94505200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:94503800-94505400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:94503800-94510200	Weak transcription	Ovary	ovary
20	chr1:94504000-94505200	Enhancers	HSMM	muscle
21	chr1:94504000-94505400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:94504000-94505600	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr1:94504000-94505600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr1:94504000-94506200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr1:94504000-94506600	Enhancers	HUVEC	blood vessel
26	chr1:94504200-94505600	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr1:94504200-94505800	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr1:94504200-94506000	Enhancers	NH-A	brain
29	chr1:94504200-94506400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:94504400-94505400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr1:94504400-94505400	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr1:94504600-94505400	Weak transcription	Fetal Stomach	stomach
33	chr1:94504600-94505800	Enhancers	Adipose Nuclei	Adipose
34	chr1:94504600-94506000	Enhancers	Left Ventricle	heart
35	chr1:94504800-94505600	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr1:94504800-94505600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr1:94504800-94506200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:94504800-94506600	Enhancers	Fetal Heart	heart
39	chr1:94505000-94505200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr1:94505000-94505200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr1:94505000-94505200	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
42	chr1:94505000-94505600	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr1:94505000-94505600	Enhancers	Colon Smooth Muscle	Colon
44	chr1:94505000-94505600	Enhancers	A549	lung
45	chr1:94505000-94505600	Enhancers	HepG2	liver
46	chr1:94505000-94505600	Enhancers	NHLF	lung
47	chr1:94505000-94505800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr1:94505000-94505800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr1:94505000-94505800	Enhancers	Placenta	Placenta
50	chr1:94505000-94505800	Enhancers	Skeletal Muscle Female	skeletal muscle

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