Variant report

Variant	rs139613838
Chromosome Location	chr5:35856718-35856719
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr5:35856610-35857334	GM12891	blood:	n/a	chr5:35856895-35856904 chr5:35856894-35856907
2	BATF	chr5:35856698-35857333	GM12878	blood:	n/a	chr5:35857163-35857173
3	SPI1	chr5:35856651-35857281	GM12878	blood:	n/a	chr5:35856895-35856904 chr5:35856894-35856907
4	SPI1	chr5:35856618-35857258	HL-60	blood:	n/a	chr5:35856895-35856904 chr5:35856894-35856907
5	NFIC	chr5:35856683-35857404	GM12878	blood:	n/a	n/a
6	SPI1	chr5:35856703-35857200	HL-60	blood:	n/a	chr5:35856895-35856904 chr5:35856894-35856907
7	RUNX3	chr5:35856696-35857500	GM12878	blood:	n/a	n/a
8	RCOR1	chr5:35856717-35858481	IMR90	lung:	n/a	n/a
9	POLR2A	chr5:35856389-35857253	Raji	blood:	n/a	n/a
10	GATA2	chr5:35856659-35857415	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
IL7R	TF binding region

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881055	chr5:35850693-35858721	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881685	chr5:35850693-35859863	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881358	chr5:35850693-35861068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880610	chr5:35850693-35866265	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv597813	chr5:35855264-35864590	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv597814	chr5:35855410-35859002	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv881045	chr5:35856575-35861068	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35851800-35856800	Enhancers	NHDF-Ad	bronchial
2	chr5:35852000-35856800	Enhancers	Primary B cells from cord blood	blood
3	chr5:35852400-35859200	Weak transcription	Lung	lung
4	chr5:35852400-35862800	Enhancers	Hela-S3	cervix
5	chr5:35852800-35857000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:35853000-35856800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr5:35853000-35857000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr5:35853600-35856800	Enhancers	Fetal Thymus	thymus
9	chr5:35853800-35857200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:35853800-35858000	Enhancers	GM12878-XiMat	blood
11	chr5:35854200-35856800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr5:35854200-35857000	Enhancers	NHEK	skin
13	chr5:35854200-35857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:35854400-35857200	Weak transcription	Esophagus	oesophagus
15	chr5:35854400-35857400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:35854800-35856800	Enhancers	Osteobl	bone
17	chr5:35854800-35857000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
18	chr5:35854800-35857000	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
19	chr5:35854800-35857800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:35855000-35857000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
21	chr5:35855200-35856800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr5:35855200-35857000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr5:35855400-35856800	Enhancers	HSMM	muscle
24	chr5:35855400-35862400	Enhancers	HSMMtube	muscle
25	chr5:35855600-35857000	Enhancers	A549	lung
26	chr5:35855800-35857000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
27	chr5:35856000-35857000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr5:35856000-35857200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr5:35856000-35857400	Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr5:35856200-35856800	Flanking Active TSS	Primary T cells fromperipheralblood	blood
31	chr5:35856200-35856800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
32	chr5:35856200-35856800	Enhancers	HMEC	breast
33	chr5:35856200-35857000	Flanking Active TSS	Dnd41	blood
34	chr5:35856200-35857400	Enhancers	HUVEC	blood vessel
35	chr5:35856200-35859800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr5:35856400-35856800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr5:35856400-35856800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr5:35856400-35857000	Flanking Active TSS	Thymus	Thymus
39	chr5:35856400-35857400	Enhancers	Primary monocytes fromperipheralblood	blood
40	chr5:35856400-35857400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr5:35856400-35857400	Enhancers	Monocytes-CD14+_RO01746	blood
42	chr5:35856400-35858200	Enhancers	Primary hematopoietic stem cells short term culture	blood
43	chr5:35856400-35858400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr5:35856400-35858400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
45	chr5:35856400-35858800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
46	chr5:35856400-35859000	Active TSS	Primary T helper naive cells from peripheral blood	blood
47	chr5:35856600-35856800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr5:35856600-35856800	Active TSS	NHLF	lung
49	chr5:35856600-35857000	Transcr. at gene 5' and 3'	Primary T helper 17 cells PMA-I stimulated	--
50	chr5:35856600-35857000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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