Variant report

Variant	rs139628649
Chromosome Location	chr18:24993628-24993629
allele	-/GA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331699	chr18:24864438-25095929	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv833601	chr18:24908240-25080975	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv833602	chr18:24993030-25180823	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24989200-24993800	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr18:24989600-24993800	Weak transcription	Psoas Muscle	Psoas
3	chr18:24991200-24993800	Weak transcription	Adipose Nuclei	Adipose
4	chr18:24991800-24994200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr18:24992000-24994600	Enhancers	HSMM	muscle
6	chr18:24992600-24993800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr18:24992600-24993800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:24992800-24994000	Weak transcription	Fetal Muscle Leg	muscle
9	chr18:24993000-24993800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr18:24993000-24994600	Enhancers	Colon Smooth Muscle	Colon
11	chr18:24993200-24993800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr18:24993400-24993800	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr18:24993400-24994000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr18:24993400-24994400	Enhancers	NH-A	brain
15	chr18:24993400-24994600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr18:24993400-24994600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr18:24993400-24995000	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr18:24993400-24995000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr18:24993600-24993800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr18:24993600-24993800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
21	chr18:24993600-24994000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr18:24993600-24994200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr18:24993600-24994400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr18:24993600-24994400	Enhancers	Rectal Smooth Muscle	rectum
25	chr18:24993600-24994600	Enhancers	HSMMtube	muscle
26	chr18:24993600-24995800	Enhancers	Fetal Kidney	kidney

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