Variant report

Variant	rs1396372
Chromosome Location	chr11:92877939-92877940
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SLC36A4-3	chr11:92877341-92879658	NONHSAT023638

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16918634	1.00[AMR][1000 genomes]
rs7110177	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7947679	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555904	chr11:92640787-92881933	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv435	chr11:92853766-92887893	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92862800-92880400	Weak transcription	Aorta	Aorta
2	chr11:92866600-92880000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:92867200-92896400	Weak transcription	Primary B cells from peripheral blood	blood
4	chr11:92868000-92889000	Weak transcription	Adipose Nuclei	Adipose
5	chr11:92868400-92880000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
7	chr11:92874000-92880400	Weak transcription	NH-A	brain
8	chr11:92875000-92878400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr11:92875000-92892800	Weak transcription	Primary B cells from cord blood	blood
10	chr11:92875400-92910400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:92875800-92880200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr11:92876000-92879600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr11:92876400-92896600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr11:92876600-92880400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:92876600-92883800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr11:92876600-92885000	Weak transcription	Fetal Lung	lung
17	chr11:92876600-92885200	Weak transcription	Primary T cells from cord blood	blood
18	chr11:92876600-92900400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr11:92876600-92910600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:92876800-92910600	Weak transcription	Lung	lung
21	chr11:92877000-92878000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:92877000-92890400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:92877000-92911400	Weak transcription	Osteobl	bone
24	chr11:92877200-92878600	Weak transcription	HSMMtube	muscle
25	chr11:92877200-92890000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:92877200-92894800	Weak transcription	HSMM	muscle
27	chr11:92877400-92878200	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr11:92877800-92899600	Weak transcription	NHLF	lung
29	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--

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