Variant report

Variant	rs139657386
Chromosome Location	chr1:161235978-161235979
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:161228430..161230750-chr1:161235534..161238135,2	MCF-7	breast:
2	chr1:161227688..161230234-chr1:161234768..161237380,2	MCF-7	breast:
3	chr1:161229889..161232448-chr1:161233494..161236139,3	K562	blood:

Variant related genes	Relation type
ENSG00000248485	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530077	chr1:160836448-161284904	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv520253	chr1:161234623-161237892	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161231600-161236000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:161232000-161236600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:161232600-161237000	Weak transcription	GM12878-XiMat	blood
4	chr1:161233400-161237000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr1:161234800-161237600	Enhancers	Ovary	ovary
6	chr1:161235000-161237400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:161235200-161236000	Enhancers	Stomach Smooth Muscle	stomach
8	chr1:161235200-161236200	Enhancers	Fetal Heart	heart
9	chr1:161235200-161236400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:161235200-161237400	Enhancers	Rectal Smooth Muscle	rectum
11	chr1:161235200-161238000	Enhancers	Fetal Stomach	stomach
12	chr1:161235400-161236000	Enhancers	Colon Smooth Muscle	Colon
13	chr1:161235400-161237200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:161235600-161237200	Weak transcription	Placenta	Placenta
15	chr1:161235800-161236200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr1:161235800-161236400	Enhancers	H1 Cell Line	embryonic stem cell
17	chr1:161235800-161236400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:161235800-161236400	Enhancers	NH-A	brain
19	chr1:161235800-161236600	Enhancers	HSMM	muscle
20	chr1:161235800-161236800	Bivalent Enhancer	Osteobl	bone
21	chr1:161235800-161237000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr1:161235800-161237200	Enhancers	Brain Anterior Caudate	brain
23	chr1:161235800-161237200	Enhancers	HSMMtube	muscle
24	chr1:161235800-161237400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr1:161235800-161237400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr1:161235800-161237400	Enhancers	A549	lung
27	chr1:161235800-161237600	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr1:161235800-161237600	Enhancers	Fetal Muscle Leg	muscle

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