Variant report

Variant	rs139663920
Chromosome Location	chr14:34835129-34835130
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:34831090..34836007-chr14:34929679..34932517,6	MCF-7	breast:
2	chr14:34834264..34835188-chr14:34967046..34968623,5	MCF-7	breast:
3	chr14:34830868..34842924-chr14:34928180..34935370,25	MCF-7	breast:
4	chr14:34827197..34829438-chr14:34832825..34835803,3	MCF-7	breast:
5	chr14:34833069..34836111-chr14:35024176..35025897,3	K562	blood:

Variant related genes	Relation type
ENSG00000165389	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000206588	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	esv34180	chr14:34480514-34838295	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	nsv1051104	chr14:34592378-35007083	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv949738	chr14:34616331-34990688	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv564192	chr14:34725233-34996507	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv564193	chr14:34728127-35000188	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
7	nsv528989	chr14:34744426-34998705	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
8	esv2754221	chr14:34783048-34838295	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	esv2761577	chr14:34792079-34839752	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv1054949	chr14:34834260-34992049	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
11	nsv542025	chr14:34834260-34992049	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:34826000-34837200	Weak transcription	Pancreas	Pancrea
2	chr14:34829400-34837200	Weak transcription	HMEC	breast
3	chr14:34829400-34838600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:34830000-34835400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr14:34831000-34837200	Weak transcription	Adipose Nuclei	Adipose
6	chr14:34831400-34837200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr14:34831400-34838000	Weak transcription	Esophagus	oesophagus
8	chr14:34831400-34839400	Weak transcription	Lung	lung
9	chr14:34831600-34838200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr14:34831600-34840000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:34832600-34837000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr14:34833400-34835400	Enhancers	Monocytes-CD14+_RO01746	blood
13	chr14:34833400-34837000	Weak transcription	Primary neutrophils fromperipheralblood	blood
14	chr14:34833400-34838000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr14:34833400-34838000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:34833600-34837200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr14:34833800-34837200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr14:34834400-34837000	Weak transcription	NHEK	skin
19	chr14:34834400-34837400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:34834400-34837800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr14:34834600-34835200	Enhancers	Liver	Liver
22	chr14:34834600-34835200	Flanking Active TSS	HepG2	liver
23	chr14:34834600-34835400	Enhancers	Brain Hippocampus Middle	brain
24	chr14:34834800-34835200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:34834800-34835200	Enhancers	Brain Anterior Caudate	brain
26	chr14:34834800-34835200	Enhancers	Brain Substantia Nigra	brain
27	chr14:34834800-34835200	Flanking Active TSS	A549	lung
28	chr14:34834800-34835400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr14:34834800-34835400	Enhancers	Fetal Intestine Small	intestine
30	chr14:34834800-34835400	Enhancers	Rectal Mucosa Donor 31	rectum
31	chr14:34834800-34835400	Enhancers	Hela-S3	cervix
32	chr14:34835000-34835200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr14:34835000-34836600	Weak transcription	Stomach Mucosa	stomach
34	chr14:34835000-34837000	Weak transcription	Primary hematopoietic stem cells	blood
35	chr14:34835000-34837000	Weak transcription	Fetal Intestine Large	intestine
36	chr14:34835000-34837200	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links